Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02785

Experiment: 24hr PHYTO2 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS02775 and BPHYT_RS02780 are separated by 363 nucleotidesBPHYT_RS02780 and BPHYT_RS02785 are separated by 42 nucleotidesBPHYT_RS02785 and BPHYT_RS02790 are separated by 192 nucleotides BPHYT_RS02775: BPHYT_RS02775 - RNA polymerase sigma 70, at 623,239 to 624,174 _RS02775 BPHYT_RS02780: BPHYT_RS02780 - deacylase, at 624,538 to 625,101 _RS02780 BPHYT_RS02785: BPHYT_RS02785 - hypothetical protein, at 625,144 to 625,527 _RS02785 BPHYT_RS02790: BPHYT_RS02790 - hypothetical protein, at 625,720 to 626,763 _RS02790 Position (kb) 625 626Strain fitness (log2 ratio) -2 -1 0 1 2at 624.177 kb on - strandat 624.267 kb on + strandat 624.267 kb on + strandat 624.268 kb on - strandat 624.287 kb on + strandat 624.288 kb on - strandat 624.288 kb on - strandat 624.363 kb on + strandat 624.371 kb on - strandat 624.396 kb on + strandat 624.396 kb on + strandat 624.396 kb on + strandat 624.396 kb on + strandat 624.397 kb on - strandat 624.429 kb on + strandat 624.456 kb on - strandat 624.456 kb on - strandat 624.482 kb on + strandat 624.482 kb on + strandat 624.483 kb on - strandat 624.500 kb on + strandat 624.536 kb on - strandat 624.555 kb on + strandat 625.001 kb on - strand, within BPHYT_RS02780at 625.065 kb on - strandat 625.079 kb on + strandat 625.079 kb on + strandat 625.079 kb on + strandat 625.079 kb on + strandat 625.079 kb on + strandat 625.080 kb on - strandat 625.081 kb on + strandat 625.081 kb on + strandat 625.091 kb on - strandat 625.255 kb on + strand, within BPHYT_RS02785at 625.256 kb on - strand, within BPHYT_RS02785at 625.256 kb on - strand, within BPHYT_RS02785at 625.263 kb on + strand, within BPHYT_RS02785at 625.264 kb on - strand, within BPHYT_RS02785at 625.450 kb on + strand, within BPHYT_RS02785at 625.464 kb on + strand, within BPHYT_RS02785at 625.464 kb on + strand, within BPHYT_RS02785at 625.790 kb on + strandat 625.831 kb on + strand, within BPHYT_RS02790at 625.831 kb on + strand, within BPHYT_RS02790at 625.832 kb on - strand, within BPHYT_RS02790at 626.244 kb on - strand, within BPHYT_RS02790at 626.381 kb on + strand, within BPHYT_RS02790at 626.381 kb on + strand, within BPHYT_RS02790at 626.382 kb on - strand, within BPHYT_RS02790

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO2 MOI 0.1
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624,177 - +0.1
624,267 + +0.0
624,267 + -0.7
624,268 - +0.3
624,287 + -0.8
624,288 - -0.1
624,288 - -0.8
624,363 + -1.6
624,371 - -0.4
624,396 + +2.3
624,396 + -0.8
624,396 + +0.3
624,396 + -0.3
624,397 - +0.6
624,429 + -0.4
624,456 - -0.4
624,456 - +0.2
624,482 + -1.4
624,482 + -0.0
624,483 - +0.8
624,500 + +0.3
624,536 - +0.6
624,555 + -1.7
625,001 - BPHYT_RS02780 0.82 -1.6
625,065 - +0.2
625,079 + -0.1
625,079 + +0.0
625,079 + -1.2
625,079 + -0.1
625,079 + -0.4
625,080 - -0.0
625,081 + -0.6
625,081 + -0.5
625,091 - +0.2
625,255 + BPHYT_RS02785 0.29 -1.4
625,256 - BPHYT_RS02785 0.29 -2.4
625,256 - BPHYT_RS02785 0.29 -0.8
625,263 + BPHYT_RS02785 0.31 -0.9
625,264 - BPHYT_RS02785 0.31 -0.8
625,450 + BPHYT_RS02785 0.80 -1.4
625,464 + BPHYT_RS02785 0.83 -2.0
625,464 + BPHYT_RS02785 0.83 +0.0
625,790 + +0.3
625,831 + BPHYT_RS02790 0.11 -0.1
625,831 + BPHYT_RS02790 0.11 +0.2
625,832 - BPHYT_RS02790 0.11 -0.3
626,244 - BPHYT_RS02790 0.50 +0.3
626,381 + BPHYT_RS02790 0.63 +1.2
626,381 + BPHYT_RS02790 0.63 +0.0
626,382 - BPHYT_RS02790 0.63 -0.7

Or see this region's nucleotide sequence