Experiment: 24hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36470 and BPHYT_RS36475 are separated by 431 nucleotides BPHYT_RS36475 and BPHYT_RS36480 are separated by 124 nucleotides BPHYT_RS36480 and BPHYT_RS36485 are separated by 65 nucleotides
BPHYT_RS36470: BPHYT_RS36470 - hypothetical protein, at 103,926 to 104,846
_RS36470
BPHYT_RS36475: BPHYT_RS36475 - hypothetical protein, at 105,278 to 105,775
_RS36475
BPHYT_RS36480: BPHYT_RS36480 - hypothetical protein, at 105,900 to 106,565
_RS36480
BPHYT_RS36485: BPHYT_RS36485 - hypothetical protein, at 106,631 to 107,155
_RS36485
Position (kb) 105
106 Strain fitness (log2 ratio) -2
-1
0
1 at 104.986 kb on + strand at 105.113 kb on - strand at 105.210 kb on + strand at 105.213 kb on + strand at 105.279 kb on - strand at 105.368 kb on - strand, within BPHYT_RS36475 at 105.462 kb on - strand, within BPHYT_RS36475 at 105.617 kb on + strand, within BPHYT_RS36475 at 105.618 kb on - strand, within BPHYT_RS36475 at 106.166 kb on + strand, within BPHYT_RS36480 at 106.167 kb on - strand, within BPHYT_RS36480 at 106.248 kb on - strand at 106.261 kb on - strand, within BPHYT_RS36480 at 106.442 kb on - strand, within BPHYT_RS36480 at 106.551 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO2 MOI 1 remove 104,986 + -0.7 105,113 - -0.9 105,210 + -0.1 105,213 + +0.2 105,279 - +0.4 105,368 - BPHYT_RS36475 0.18 +0.6 105,462 - BPHYT_RS36475 0.37 +0.4 105,617 + BPHYT_RS36475 0.68 -0.3 105,618 - BPHYT_RS36475 0.68 -0.0 106,166 + BPHYT_RS36480 0.40 +0.9 106,167 - BPHYT_RS36480 0.40 +0.0 106,248 - +0.9 106,261 - BPHYT_RS36480 0.54 -1.2 106,442 - BPHYT_RS36480 0.81 -2.3 106,551 - -0.6
Or see this region's nucleotide sequence