Experiment: 24hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36290 and BPHYT_RS36295 are separated by 43 nucleotides BPHYT_RS36295 and BPHYT_RS36300 are separated by 576 nucleotides BPHYT_RS36300 and BPHYT_RS36305 overlap by 32 nucleotides BPHYT_RS36305 and BPHYT_RS36310 are separated by 4 nucleotides BPHYT_RS36310 and BPHYT_RS36315 overlap by 17 nucleotides
BPHYT_RS36290: BPHYT_RS36290 - hypothetical protein, at 71,492 to 72,151
_RS36290
BPHYT_RS36295: BPHYT_RS36295 - hypothetical protein, at 72,195 to 72,563
_RS36295
BPHYT_RS36300: BPHYT_RS36300 - hypothetical protein, at 73,140 to 73,421
_RS36300
BPHYT_RS36305: BPHYT_RS36305 - hypothetical protein, at 73,390 to 73,812
_RS36305
BPHYT_RS36310: BPHYT_RS36310 - hypothetical protein, at 73,817 to 74,152
_RS36310
BPHYT_RS36315: BPHYT_RS36315 - CagE TrbE VirB component of type IV transporter system, at 74,136 to 76,685
_RS36315
Position (kb) 73
74 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 72.170 kb on - strand at 72.170 kb on - strand at 72.223 kb on - strand at 72.256 kb on - strand, within BPHYT_RS36295 at 72.260 kb on - strand, within BPHYT_RS36295 at 72.260 kb on - strand, within BPHYT_RS36295 at 72.270 kb on - strand, within BPHYT_RS36295 at 72.270 kb on - strand, within BPHYT_RS36295 at 72.270 kb on - strand, within BPHYT_RS36295 at 72.270 kb on - strand at 72.270 kb on - strand, within BPHYT_RS36295 at 72.270 kb on - strand, within BPHYT_RS36295 at 72.274 kb on - strand, within BPHYT_RS36295 at 72.274 kb on - strand, within BPHYT_RS36295 at 72.350 kb on + strand, within BPHYT_RS36295 at 72.351 kb on - strand, within BPHYT_RS36295 at 72.352 kb on + strand, within BPHYT_RS36295 at 72.353 kb on - strand, within BPHYT_RS36295 at 72.353 kb on - strand, within BPHYT_RS36295 at 72.353 kb on - strand, within BPHYT_RS36295 at 72.445 kb on - strand at 72.462 kb on - strand, within BPHYT_RS36295 at 72.528 kb on - strand at 72.537 kb on - strand at 72.634 kb on + strand at 72.747 kb on - strand at 72.747 kb on - strand at 72.947 kb on - strand at 73.049 kb on - strand at 73.049 kb on - strand at 73.095 kb on - strand at 73.135 kb on - strand at 73.135 kb on - strand at 73.314 kb on - strand, within BPHYT_RS36300 at 73.362 kb on - strand, within BPHYT_RS36300 at 73.362 kb on - strand, within BPHYT_RS36300 at 73.362 kb on - strand, within BPHYT_RS36300 at 73.362 kb on - strand, within BPHYT_RS36300 at 73.362 kb on - strand, within BPHYT_RS36300 at 73.420 kb on - strand at 73.452 kb on + strand, within BPHYT_RS36305 at 73.501 kb on + strand, within BPHYT_RS36305 at 73.502 kb on - strand, within BPHYT_RS36305 at 73.502 kb on - strand, within BPHYT_RS36305 at 73.502 kb on - strand, within BPHYT_RS36305 at 73.502 kb on - strand, within BPHYT_RS36305 at 73.502 kb on - strand, within BPHYT_RS36305 at 73.502 kb on - strand, within BPHYT_RS36305 at 73.502 kb on - strand, within BPHYT_RS36305 at 73.600 kb on - strand, within BPHYT_RS36305 at 73.653 kb on - strand, within BPHYT_RS36305 at 73.817 kb on - strand at 73.884 kb on - strand, within BPHYT_RS36310 at 73.884 kb on - strand, within BPHYT_RS36310 at 73.888 kb on - strand, within BPHYT_RS36310 at 74.043 kb on - strand, within BPHYT_RS36310 at 74.043 kb on - strand, within BPHYT_RS36310 at 74.043 kb on - strand, within BPHYT_RS36310 at 74.043 kb on - strand, within BPHYT_RS36310 at 74.049 kb on - strand, within BPHYT_RS36310 at 74.136 kb on - strand at 74.136 kb on - strand at 74.136 kb on - strand at 74.136 kb on - strand at 74.136 kb on - strand at 74.146 kb on - strand at 74.178 kb on - strand at 74.184 kb on + strand at 74.184 kb on + strand at 74.199 kb on - strand at 74.199 kb on - strand at 74.250 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO2 MOI 1 remove 72,170 - -0.2 72,170 - +0.3 72,223 - -1.9 72,256 - BPHYT_RS36295 0.17 +0.2 72,260 - BPHYT_RS36295 0.18 +0.7 72,260 - BPHYT_RS36295 0.18 -1.0 72,270 - BPHYT_RS36295 0.20 -0.6 72,270 - BPHYT_RS36295 0.20 -0.7 72,270 - BPHYT_RS36295 0.20 -0.4 72,270 - +3.8 72,270 - BPHYT_RS36295 0.20 -1.0 72,270 - BPHYT_RS36295 0.20 -1.4 72,274 - BPHYT_RS36295 0.21 -0.7 72,274 - BPHYT_RS36295 0.21 -1.1 72,350 + BPHYT_RS36295 0.42 -0.3 72,351 - BPHYT_RS36295 0.42 -0.3 72,352 + BPHYT_RS36295 0.43 -2.1 72,353 - BPHYT_RS36295 0.43 -0.1 72,353 - BPHYT_RS36295 0.43 +0.1 72,353 - BPHYT_RS36295 0.43 -0.0 72,445 - -0.9 72,462 - BPHYT_RS36295 0.72 -0.3 72,528 - -0.8 72,537 - -0.9 72,634 + -0.4 72,747 - +1.1 72,747 - +0.8 72,947 - -0.1 73,049 - -0.2 73,049 - -0.3 73,095 - -0.3 73,135 - -0.7 73,135 - -0.1 73,314 - BPHYT_RS36300 0.62 +0.3 73,362 - BPHYT_RS36300 0.79 -0.8 73,362 - BPHYT_RS36300 0.79 +0.8 73,362 - BPHYT_RS36300 0.79 -0.3 73,362 - BPHYT_RS36300 0.79 -1.4 73,362 - BPHYT_RS36300 0.79 +0.6 73,420 - +2.4 73,452 + BPHYT_RS36305 0.15 -2.4 73,501 + BPHYT_RS36305 0.26 -0.7 73,502 - BPHYT_RS36305 0.26 -1.4 73,502 - BPHYT_RS36305 0.26 +0.6 73,502 - BPHYT_RS36305 0.26 +0.1 73,502 - BPHYT_RS36305 0.26 -0.7 73,502 - BPHYT_RS36305 0.26 -0.1 73,502 - BPHYT_RS36305 0.26 +0.1 73,502 - BPHYT_RS36305 0.26 +0.1 73,600 - BPHYT_RS36305 0.50 +0.7 73,653 - BPHYT_RS36305 0.62 +0.1 73,817 - +0.6 73,884 - BPHYT_RS36310 0.20 +0.3 73,884 - BPHYT_RS36310 0.20 +0.8 73,888 - BPHYT_RS36310 0.21 +0.3 74,043 - BPHYT_RS36310 0.67 -0.2 74,043 - BPHYT_RS36310 0.67 +0.1 74,043 - BPHYT_RS36310 0.67 -0.1 74,043 - BPHYT_RS36310 0.67 +0.3 74,049 - BPHYT_RS36310 0.69 +1.0 74,136 - +0.7 74,136 - +0.4 74,136 - +0.1 74,136 - +0.2 74,136 - -0.2 74,146 - +0.1 74,178 - -0.3 74,184 + +0.0 74,184 + +0.2 74,199 - +0.3 74,199 - -1.1 74,250 - +0.2
Or see this region's nucleotide sequence