Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34110

Experiment: 24hr PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO2 MOI 1
3,250,515	-		BPHYT_RS34105	0.59	+1.5
3,250,554	-		BPHYT_RS34105	0.61	+0.4
3,250,677	-		BPHYT_RS34105	0.69	-0.1
3,250,677	-		BPHYT_RS34105	0.69	+0.7
3,250,827	-		BPHYT_RS34105	0.79	-1.7
3,251,010	-				-0.2
3,251,233	+				+0.0
3,251,425	-				-1.3
3,251,425	-				-0.2
3,251,425	-				-1.0
3,251,425	-				-1.0
3,251,439	+				-0.5
3,251,439	+				-1.1
3,251,439	+				-0.9
3,251,439	+				-0.6
3,251,440	-				-0.0
3,251,440	-				-0.4
3,251,440	-				-1.4
3,251,448	+				-0.7
3,251,700	+		BPHYT_RS34110	0.15	-1.7
3,252,004	-		BPHYT_RS34110	0.23	-1.1
3,252,004	-		BPHYT_RS34110	0.23	-1.3
3,252,051	+		BPHYT_RS34110	0.24	-0.0
3,252,063	+		BPHYT_RS34110	0.24	+0.0
3,252,063	+		BPHYT_RS34110	0.24	+0.7
3,252,295	-		BPHYT_RS34110	0.30	+0.6
3,252,811	-		BPHYT_RS34110	0.44	+0.0
3,253,078	-		BPHYT_RS34110	0.51	-1.9
3,253,463	-		BPHYT_RS34110	0.62	+1.8
3,253,463	-		BPHYT_RS34110	0.62	-0.5
3,253,464	+		BPHYT_RS34110	0.62	-0.8
3,253,465	-		BPHYT_RS34110	0.62	-0.8
3,253,593	+		BPHYT_RS34110	0.65	-1.4
3,253,593	+		BPHYT_RS34110	0.65	-1.8
3,253,658	+		BPHYT_RS34110	0.67	-0.1
3,253,658	+		BPHYT_RS34110	0.67	+0.1
3,254,142	+		BPHYT_RS34110	0.80	-1.8
3,254,142	+		BPHYT_RS34110	0.80	+0.0
3,254,143	-		BPHYT_RS34110	0.80	-0.5
3,254,143	-		BPHYT_RS34110	0.80	-0.5
3,254,343	-		BPHYT_RS34110	0.85	+0.8
3,254,343	-		BPHYT_RS34110	0.85	-2.2
3,254,642	+				-2.3
3,254,642	+				-2.0
3,254,643	-				+0.8
3,254,790	-				-0.8
3,254,873	+				-0.6
3,254,885	-				+0.7
3,254,885	-				+1.1
3,254,914	-				-0.3
3,254,962	+				-2.9
3,254,965	-				+0.3
3,254,965	-				-0.2
3,254,965	-				-0.5
3,254,987	+				-1.1
3,254,989	+				-1.0
3,254,990	-				-1.2
3,254,990	-				-0.8
3,255,007	+				+0.4
3,255,008	-				+1.0
3,255,008	-				+0.2
3,255,014	+				-0.3
3,255,015	-				-0.3
3,255,124	+				-0.4
3,255,124	+				+0.6
3,255,124	+				-0.0
3,255,125	-				+0.0
3,255,125	-				-1.1
3,255,125	-				+0.4