Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33765
Experiment: 24hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 24hr PHYTO2 MOI 1 |
---|---|---|---|---|---|
remove | |||||
3,157,405 | - | -0.2 | |||
3,157,494 | + | +0.3 | |||
3,157,510 | + | +1.3 | |||
3,157,692 | + | -0.8 | |||
3,157,737 | + | -1.7 | |||
3,157,789 | - | +1.3 | |||
3,157,927 | - | BPHYT_RS33765 | 0.23 | -1.5 | |
3,158,437 | - | -2.0 | |||
3,158,439 | + | -1.2 | |||
3,158,528 | + | -0.3 | |||
3,158,529 | - | +0.6 | |||
3,158,636 | + | -0.6 | |||
3,158,937 | + | +0.2 |
Or see this region's nucleotide sequence