Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31600

Experiment: 24hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS31595 and BPHYT_RS31600 are separated by 225 nucleotidesBPHYT_RS31600 and BPHYT_RS31605 are separated by 54 nucleotides BPHYT_RS31595: BPHYT_RS31595 - hypothetical protein, at 2,639,982 to 2,640,674 _RS31595 BPHYT_RS31600: BPHYT_RS31600 - hypothetical protein, at 2,640,900 to 2,641,340 _RS31600 BPHYT_RS31605: BPHYT_RS31605 - glucoamylase, at 2,641,395 to 2,643,185 _RS31605 Position (kb) 2640 2641 2642Strain fitness (log2 ratio) -1 0 1at 2641.075 kb on + strand, within BPHYT_RS31600at 2641.075 kb on + strand, within BPHYT_RS31600at 2641.817 kb on - strand, within BPHYT_RS31605at 2641.971 kb on + strand, within BPHYT_RS31605at 2642.272 kb on + strand, within BPHYT_RS31605at 2642.273 kb on - strand, within BPHYT_RS31605

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO2 MOI 1
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2,641,075 + BPHYT_RS31600 0.40 -1.2
2,641,075 + BPHYT_RS31600 0.40 -1.0
2,641,817 - BPHYT_RS31605 0.24 -0.1
2,641,971 + BPHYT_RS31605 0.32 +0.9
2,642,272 + BPHYT_RS31605 0.49 -0.7
2,642,273 - BPHYT_RS31605 0.49 -0.6

Or see this region's nucleotide sequence