Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30720

Experiment: 24hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30705 and BPHYT_RS30710 are separated by 38 nucleotidesBPHYT_RS30710 and BPHYT_RS30715 are separated by 246 nucleotidesBPHYT_RS30715 and BPHYT_RS30720 are separated by 79 nucleotidesBPHYT_RS30720 and BPHYT_RS30725 are separated by 118 nucleotidesBPHYT_RS30725 and BPHYT_RS30730 overlap by 2 nucleotides BPHYT_RS30705: BPHYT_RS30705 - hypothetical protein, at 2,448,039 to 2,448,236 _RS30705 BPHYT_RS30710: BPHYT_RS30710 - hypothetical protein, at 2,448,275 to 2,448,532 _RS30710 BPHYT_RS30715: BPHYT_RS30715 - hypothetical protein, at 2,448,779 to 2,449,096 _RS30715 BPHYT_RS30720: BPHYT_RS30720 - hypothetical protein, at 2,449,176 to 2,449,529 _RS30720 BPHYT_RS30725: BPHYT_RS30725 - hypothetical protein, at 2,449,648 to 2,449,896 _RS30725 BPHYT_RS30730: BPHYT_RS30730 - MFS transporter, at 2,449,895 to 2,451,121 _RS30730 Position (kb) 2449 2450Strain fitness (log2 ratio) -2 -1 0 1at 2448.249 kb on - strandat 2449.177 kb on + strandat 2449.245 kb on + strand, within BPHYT_RS30720at 2449.327 kb on + strand, within BPHYT_RS30720at 2449.562 kb on - strandat 2449.831 kb on - strand, within BPHYT_RS30725at 2449.913 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO2 MOI 1
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2,448,249 - -1.3
2,449,177 + +1.0
2,449,245 + BPHYT_RS30720 0.19 -1.8
2,449,327 + BPHYT_RS30720 0.43 -0.6
2,449,562 - +0.4
2,449,831 - BPHYT_RS30725 0.73 -1.2
2,449,913 - -0.8

Or see this region's nucleotide sequence