Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29960

Experiment: 24hr PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO2 MOI 1
2,274,758	-		BPHYT_RS29955	0.18	+0.2
2,274,761	+		BPHYT_RS29955	0.18	+0.1
2,274,761	+		BPHYT_RS29955	0.18	-0.8
2,274,762	-		BPHYT_RS29955	0.18	+0.4
2,274,762	-		BPHYT_RS29955	0.18	-0.8
2,274,882	-		BPHYT_RS29955	0.31	+1.2
2,275,013	+		BPHYT_RS29955	0.46	+0.3
2,275,014	-		BPHYT_RS29955	0.46	-0.3
2,275,014	-		BPHYT_RS29955	0.46	+0.3
2,275,015	-		BPHYT_RS29955	0.46	+1.1
2,275,460	+				-1.4
2,275,461	-				-0.5
2,275,469	+				+0.5
2,275,533	-				-1.4
2,275,533	-				-1.5
2,275,533	-				+1.2
2,275,635	+				+0.5
2,275,635	+				+0.4
2,275,636	-				-0.5
2,275,636	-				-0.4
2,275,767	+				-2.8
2,275,768	-				-0.5
2,275,768	-				-1.9
2,276,052	+		BPHYT_RS29960	0.36	-0.4
2,276,118	-		BPHYT_RS29960	0.43	-0.7
2,276,118	-		BPHYT_RS29960	0.43	+0.3
2,276,598	-				+0.6
2,276,679	+				-0.0
2,276,680	-				-0.4
2,276,789	+				+0.7
2,276,840	-				+0.0
2,276,929	+				+0.1
2,277,003	+		BPHYT_RS29965	0.13	-1.0
2,277,003	+		BPHYT_RS29965	0.13	-2.7
2,277,003	+		BPHYT_RS29965	0.13	-0.8
2,277,028	-		BPHYT_RS29965	0.15	-1.0
2,277,608	-		BPHYT_RS29965	0.56	-0.1