Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27570

Experiment: 24hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27565 and BPHYT_RS27570 are separated by 638 nucleotidesBPHYT_RS27570 and BPHYT_RS27575 are separated by 192 nucleotides BPHYT_RS27565: BPHYT_RS27565 - hydrolase, at 1,757,425 to 1,757,904 _RS27565 BPHYT_RS27570: BPHYT_RS27570 - universal stress protein UspA, at 1,758,543 to 1,759,040 _RS27570 BPHYT_RS27575: BPHYT_RS27575 - ATP synthase F1 subunit gamma, at 1,759,233 to 1,760,081 _RS27575 Position (kb) 1758 1759 1760Strain fitness (log2 ratio) -1 0 1 2at 1757.595 kb on + strand, within BPHYT_RS27565at 1757.596 kb on - strand, within BPHYT_RS27565at 1757.681 kb on - strand, within BPHYT_RS27565at 1757.795 kb on + strand, within BPHYT_RS27565at 1757.795 kb on + strand, within BPHYT_RS27565at 1757.795 kb on + strand, within BPHYT_RS27565at 1757.813 kb on + strand, within BPHYT_RS27565at 1758.310 kb on + strandat 1758.311 kb on - strandat 1758.627 kb on - strand, within BPHYT_RS27570at 1758.890 kb on - strand, within BPHYT_RS27570at 1758.929 kb on + strand, within BPHYT_RS27570at 1759.037 kb on - strandat 1759.429 kb on + strand, within BPHYT_RS27575at 1759.429 kb on + strand, within BPHYT_RS27575at 1759.435 kb on + strand, within BPHYT_RS27575at 1759.560 kb on - strand, within BPHYT_RS27575at 1759.788 kb on + strand, within BPHYT_RS27575

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO2 MOI 1
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1,757,595 + BPHYT_RS27565 0.35 -1.2
1,757,596 - BPHYT_RS27565 0.36 +1.0
1,757,681 - BPHYT_RS27565 0.53 +2.4
1,757,795 + BPHYT_RS27565 0.77 +0.3
1,757,795 + BPHYT_RS27565 0.77 +0.1
1,757,795 + BPHYT_RS27565 0.77 -0.1
1,757,813 + BPHYT_RS27565 0.81 -1.4
1,758,310 + -0.4
1,758,311 - +0.1
1,758,627 - BPHYT_RS27570 0.17 +0.9
1,758,890 - BPHYT_RS27570 0.70 +0.8
1,758,929 + BPHYT_RS27570 0.78 -1.5
1,759,037 - -0.2
1,759,429 + BPHYT_RS27575 0.23 -1.5
1,759,429 + BPHYT_RS27575 0.23 +0.1
1,759,435 + BPHYT_RS27575 0.24 -0.0
1,759,560 - BPHYT_RS27575 0.39 +0.3
1,759,788 + BPHYT_RS27575 0.65 +0.7

Or see this region's nucleotide sequence