Experiment: 24hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS26860 and BPHYT_RS26865 are separated by 37 nucleotides BPHYT_RS26865 and BPHYT_RS26870 are separated by 278 nucleotides BPHYT_RS26870 and BPHYT_RS26875 are separated by 19 nucleotides
BPHYT_RS26860: BPHYT_RS26860 - major facilitator transporter, at 1,599,116 to 1,600,555
_RS26860
BPHYT_RS26865: BPHYT_RS26865 - GNAT family acetyltransferase, at 1,600,593 to 1,601,027
_RS26865
BPHYT_RS26870: BPHYT_RS26870 - cytochrome C551, at 1,601,306 to 1,601,974
_RS26870
BPHYT_RS26875: BPHYT_RS26875 - procollagen-proline dioxygenase, at 1,601,994 to 1,602,881
_RS26875
Position (kb) 1600
1601
1602 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 1599.595 kb on + strand, within BPHYT_RS26860 at 1599.602 kb on + strand, within BPHYT_RS26860 at 1599.602 kb on + strand, within BPHYT_RS26860 at 1599.603 kb on - strand, within BPHYT_RS26860 at 1599.838 kb on - strand, within BPHYT_RS26860 at 1599.971 kb on + strand, within BPHYT_RS26860 at 1599.971 kb on + strand, within BPHYT_RS26860 at 1600.478 kb on + strand at 1600.748 kb on + strand, within BPHYT_RS26865 at 1600.749 kb on - strand, within BPHYT_RS26865 at 1600.806 kb on + strand, within BPHYT_RS26865 at 1600.852 kb on - strand, within BPHYT_RS26865 at 1600.942 kb on + strand, within BPHYT_RS26865 at 1600.942 kb on + strand, within BPHYT_RS26865 at 1600.943 kb on - strand, within BPHYT_RS26865 at 1600.943 kb on - strand, within BPHYT_RS26865 at 1600.943 kb on - strand, within BPHYT_RS26865 at 1600.945 kb on - strand, within BPHYT_RS26865 at 1600.945 kb on - strand, within BPHYT_RS26865 at 1601.053 kb on + strand at 1601.053 kb on + strand at 1601.462 kb on + strand, within BPHYT_RS26870 at 1601.630 kb on - strand, within BPHYT_RS26870 at 1601.871 kb on - strand, within BPHYT_RS26870 at 1601.973 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO2 MOI 1 remove 1,599,595 + BPHYT_RS26860 0.33 -0.1 1,599,602 + BPHYT_RS26860 0.34 +0.2 1,599,602 + BPHYT_RS26860 0.34 -0.2 1,599,603 - BPHYT_RS26860 0.34 -0.6 1,599,838 - BPHYT_RS26860 0.50 -0.0 1,599,971 + BPHYT_RS26860 0.59 -0.7 1,599,971 + BPHYT_RS26860 0.59 +0.9 1,600,478 + +0.1 1,600,748 + BPHYT_RS26865 0.36 +0.5 1,600,749 - BPHYT_RS26865 0.36 -0.1 1,600,806 + BPHYT_RS26865 0.49 +0.8 1,600,852 - BPHYT_RS26865 0.60 +0.1 1,600,942 + BPHYT_RS26865 0.80 -2.2 1,600,942 + BPHYT_RS26865 0.80 +0.6 1,600,943 - BPHYT_RS26865 0.80 -0.7 1,600,943 - BPHYT_RS26865 0.80 -0.9 1,600,943 - BPHYT_RS26865 0.80 -0.1 1,600,945 - BPHYT_RS26865 0.81 -0.4 1,600,945 - BPHYT_RS26865 0.81 -0.4 1,601,053 + +4.8 1,601,053 + +0.1 1,601,462 + BPHYT_RS26870 0.23 +0.4 1,601,630 - BPHYT_RS26870 0.48 -1.0 1,601,871 - BPHYT_RS26870 0.84 +0.3 1,601,973 - -0.1
Or see this region's nucleotide sequence