Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26470

Experiment: 24hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26465 and BPHYT_RS26470 are separated by 379 nucleotidesBPHYT_RS26470 and BPHYT_RS26475 are separated by 68 nucleotidesBPHYT_RS26475 and BPHYT_RS26480 are separated by 94 nucleotides BPHYT_RS26465: BPHYT_RS26465 - metallophosphoesterase, at 1,508,049 to 1,508,993 _RS26465 BPHYT_RS26470: BPHYT_RS26470 - MFS transporter, at 1,509,373 to 1,510,119 _RS26470 BPHYT_RS26475: BPHYT_RS26475 - glutathione S-transferase, at 1,510,188 to 1,510,835 _RS26475 BPHYT_RS26480: BPHYT_RS26480 - peptidase M1, at 1,510,930 to 1,513,113 _RS26480 Position (kb) 1509 1510 1511Strain fitness (log2 ratio) -2 -1 0 1at 1508.627 kb on + strand, within BPHYT_RS26465at 1509.269 kb on + strandat 1509.351 kb on - strandat 1509.686 kb on - strand, within BPHYT_RS26470at 1510.797 kb on + strandat 1510.921 kb on + strandat 1511.068 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO2 MOI 1
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1,508,627 + BPHYT_RS26465 0.61 -1.5
1,509,269 + -0.6
1,509,351 - -1.8
1,509,686 - BPHYT_RS26470 0.42 -1.1
1,510,797 + -0.3
1,510,921 + -0.8
1,511,068 - -0.5

Or see this region's nucleotide sequence