Experiment: 24hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS26155 and BPHYT_RS26160 are separated by 38 nucleotides BPHYT_RS26160 and BPHYT_RS26165 are separated by 56 nucleotides BPHYT_RS26165 and BPHYT_RS26170 are separated by 206 nucleotides BPHYT_RS26170 and BPHYT_RS26175 are separated by 80 nucleotides
BPHYT_RS26155: BPHYT_RS26155 - carboxylesterase, at 1,443,042 to 1,443,911
_RS26155
BPHYT_RS26160: BPHYT_RS26160 - membrane protein, at 1,443,950 to 1,444,756
_RS26160
BPHYT_RS26165: BPHYT_RS26165 - hypothetical protein, at 1,444,813 to 1,445,517
_RS26165
BPHYT_RS26170: BPHYT_RS26170 - lipocalin, at 1,445,724 to 1,446,296
_RS26170
BPHYT_RS26175: BPHYT_RS26175 - XRE family transcriptional regulator, at 1,446,377 to 1,446,949
_RS26175
Position (kb) 1444
1445
1446 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1444.142 kb on + strand, within BPHYT_RS26160 at 1444.511 kb on + strand, within BPHYT_RS26160 at 1444.603 kb on + strand, within BPHYT_RS26160 at 1444.604 kb on - strand, within BPHYT_RS26160 at 1444.754 kb on + strand at 1445.566 kb on - strand at 1445.690 kb on - strand at 1445.892 kb on + strand, within BPHYT_RS26170 at 1445.892 kb on + strand, within BPHYT_RS26170 at 1446.000 kb on - strand, within BPHYT_RS26170 at 1446.141 kb on + strand, within BPHYT_RS26170 at 1446.141 kb on + strand, within BPHYT_RS26170 at 1446.141 kb on + strand, within BPHYT_RS26170 at 1446.144 kb on - strand, within BPHYT_RS26170 at 1446.181 kb on + strand, within BPHYT_RS26170 at 1446.182 kb on - strand, within BPHYT_RS26170
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO2 MOI 1 remove 1,444,142 + BPHYT_RS26160 0.24 -1.3 1,444,511 + BPHYT_RS26160 0.70 -1.9 1,444,603 + BPHYT_RS26160 0.81 -0.5 1,444,604 - BPHYT_RS26160 0.81 -1.1 1,444,754 + +0.8 1,445,566 - +0.1 1,445,690 - -0.1 1,445,892 + BPHYT_RS26170 0.29 +0.1 1,445,892 + BPHYT_RS26170 0.29 +2.7 1,446,000 - BPHYT_RS26170 0.48 -1.0 1,446,141 + BPHYT_RS26170 0.73 -0.6 1,446,141 + BPHYT_RS26170 0.73 -0.2 1,446,141 + BPHYT_RS26170 0.73 -1.1 1,446,144 - BPHYT_RS26170 0.73 -0.8 1,446,181 + BPHYT_RS26170 0.80 -0.7 1,446,182 - BPHYT_RS26170 0.80 -1.0
Or see this region's nucleotide sequence