Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24265

Experiment: 24hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS24260 and BPHYT_RS24265 are separated by 213 nucleotidesBPHYT_RS24265 and BPHYT_RS24270 are separated by 210 nucleotides BPHYT_RS24260: BPHYT_RS24260 - RpiR family transcriptional regulator, at 1,008,152 to 1,009,048 _RS24260 BPHYT_RS24265: BPHYT_RS24265 - transporter, at 1,009,262 to 1,010,149 _RS24265 BPHYT_RS24270: BPHYT_RS24270 - C4-dicarboxylate ABC transporter substrate-binding protein, at 1,010,360 to 1,011,436 _RS24270 Position (kb) 1009 1010 1011Strain fitness (log2 ratio) -2 -1 0 1 2at 1008.433 kb on - strand, within BPHYT_RS24260at 1008.460 kb on - strand, within BPHYT_RS24260at 1009.001 kb on + strandat 1010.208 kb on - strandat 1010.361 kb on + strandat 1010.362 kb on - strandat 1010.650 kb on - strand, within BPHYT_RS24270at 1010.739 kb on + strand, within BPHYT_RS24270at 1011.087 kb on + strand, within BPHYT_RS24270

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO2 MOI 1
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1,008,433 - BPHYT_RS24260 0.31 -1.3
1,008,460 - BPHYT_RS24260 0.34 -0.8
1,009,001 + -1.0
1,010,208 - -0.3
1,010,361 + -0.3
1,010,362 - -0.9
1,010,650 - BPHYT_RS24270 0.27 -2.3
1,010,739 + BPHYT_RS24270 0.35 +1.9
1,011,087 + BPHYT_RS24270 0.68 +1.9

Or see this region's nucleotide sequence