Experiment: 24hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23750 and BPHYT_RS23755 are separated by 125 nucleotides BPHYT_RS23755 and BPHYT_RS23760 overlap by 23 nucleotides BPHYT_RS23760 and BPHYT_RS23765 overlap by 11 nucleotides
BPHYT_RS23750: BPHYT_RS23750 - phosphonate ABC transporter substrate-binding protein, at 895,509 to 896,597
_RS23750
BPHYT_RS23755: BPHYT_RS23755 - phosphonate ABC transporter ATP-binding protein, at 896,723 to 897,823
_RS23755
BPHYT_RS23760: BPHYT_RS23760 - phosphonate ABC transporter permease, at 897,801 to 898,757
_RS23760
BPHYT_RS23765: BPHYT_RS23765 - phosphonate ABC transporter permease, at 898,747 to 899,610
_RS23765
Position (kb) 896
897
898 Strain fitness (log2 ratio) -2
-1
0
1 at 895.843 kb on - strand, within BPHYT_RS23750 at 895.857 kb on + strand, within BPHYT_RS23750 at 895.858 kb on - strand, within BPHYT_RS23750 at 895.920 kb on + strand, within BPHYT_RS23750 at 895.921 kb on - strand, within BPHYT_RS23750 at 896.148 kb on + strand, within BPHYT_RS23750 at 896.595 kb on + strand at 896.699 kb on + strand at 896.699 kb on + strand at 897.056 kb on + strand, within BPHYT_RS23755 at 897.056 kb on + strand, within BPHYT_RS23755 at 897.056 kb on + strand, within BPHYT_RS23755 at 897.057 kb on - strand, within BPHYT_RS23755 at 897.309 kb on + strand, within BPHYT_RS23755 at 897.309 kb on + strand, within BPHYT_RS23755 at 897.310 kb on - strand, within BPHYT_RS23755 at 897.310 kb on - strand, within BPHYT_RS23755 at 897.474 kb on - strand, within BPHYT_RS23755 at 897.566 kb on + strand, within BPHYT_RS23755 at 897.669 kb on - strand, within BPHYT_RS23755 at 897.669 kb on - strand, within BPHYT_RS23755 at 898.047 kb on + strand, within BPHYT_RS23760 at 898.617 kb on + strand, within BPHYT_RS23760 at 898.618 kb on - strand, within BPHYT_RS23760 at 898.707 kb on + strand at 898.789 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO2 MOI 1 remove 895,843 - BPHYT_RS23750 0.31 +0.1 895,857 + BPHYT_RS23750 0.32 -1.7 895,858 - BPHYT_RS23750 0.32 -1.7 895,920 + BPHYT_RS23750 0.38 -1.5 895,921 - BPHYT_RS23750 0.38 -0.3 896,148 + BPHYT_RS23750 0.59 -0.5 896,595 + -0.4 896,699 + -0.7 896,699 + +0.2 897,056 + BPHYT_RS23755 0.30 -0.4 897,056 + BPHYT_RS23755 0.30 -0.8 897,056 + BPHYT_RS23755 0.30 +1.3 897,057 - BPHYT_RS23755 0.30 -0.1 897,309 + BPHYT_RS23755 0.53 +0.6 897,309 + BPHYT_RS23755 0.53 -0.8 897,310 - BPHYT_RS23755 0.53 +0.6 897,310 - BPHYT_RS23755 0.53 -0.4 897,474 - BPHYT_RS23755 0.68 -1.0 897,566 + BPHYT_RS23755 0.77 -0.1 897,669 - BPHYT_RS23755 0.86 +0.3 897,669 - BPHYT_RS23755 0.86 -1.5 898,047 + BPHYT_RS23760 0.26 -0.8 898,617 + BPHYT_RS23760 0.85 -1.0 898,618 - BPHYT_RS23760 0.85 -0.7 898,707 + -1.8 898,789 - -1.7
Or see this region's nucleotide sequence