Experiment: 24hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22625 and BPHYT_RS22630 are separated by 398 nucleotides BPHYT_RS22630 and BPHYT_RS22635 are separated by 20 nucleotides
BPHYT_RS22625: BPHYT_RS22625 - MFS transporter, at 632,171 to 633,472
_RS22625
BPHYT_RS22630: BPHYT_RS22630 - transcriptional regulator, at 633,871 to 634,611
_RS22630
BPHYT_RS22635: BPHYT_RS22635 - dihydrodipicolinate synthase, at 634,632 to 635,537
_RS22635
Position (kb) 633
634
635 Strain fitness (log2 ratio) -2
-1
0
1
2 at 632.988 kb on + strand, within BPHYT_RS22625 at 632.989 kb on - strand, within BPHYT_RS22625 at 633.120 kb on + strand, within BPHYT_RS22625 at 633.120 kb on + strand, within BPHYT_RS22625 at 633.317 kb on + strand, within BPHYT_RS22625 at 633.317 kb on + strand, within BPHYT_RS22625 at 633.318 kb on - strand, within BPHYT_RS22625 at 633.318 kb on - strand, within BPHYT_RS22625 at 633.507 kb on + strand at 633.508 kb on - strand at 633.508 kb on - strand at 633.520 kb on + strand at 633.664 kb on + strand at 633.665 kb on - strand at 633.751 kb on + strand at 633.791 kb on - strand at 633.794 kb on + strand at 633.795 kb on - strand at 633.800 kb on - strand at 633.853 kb on + strand at 633.858 kb on + strand at 633.859 kb on - strand at 633.859 kb on - strand at 633.876 kb on + strand at 633.876 kb on + strand at 633.959 kb on - strand, within BPHYT_RS22630 at 634.165 kb on + strand, within BPHYT_RS22630 at 634.165 kb on + strand, within BPHYT_RS22630 at 634.232 kb on - strand, within BPHYT_RS22630 at 634.525 kb on - strand, within BPHYT_RS22630 at 634.831 kb on + strand, within BPHYT_RS22635 at 634.832 kb on - strand, within BPHYT_RS22635 at 634.876 kb on + strand, within BPHYT_RS22635 at 634.877 kb on - strand, within BPHYT_RS22635 at 634.909 kb on - strand, within BPHYT_RS22635 at 635.132 kb on - strand, within BPHYT_RS22635 at 635.207 kb on - strand, within BPHYT_RS22635 at 635.472 kb on + strand at 635.473 kb on - strand at 635.514 kb on + strand at 635.529 kb on - strand at 635.576 kb on - strand at 635.576 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO2 MOI 1 remove 632,988 + BPHYT_RS22625 0.63 +0.0 632,989 - BPHYT_RS22625 0.63 -1.0 633,120 + BPHYT_RS22625 0.73 -0.5 633,120 + BPHYT_RS22625 0.73 -1.2 633,317 + BPHYT_RS22625 0.88 -1.4 633,317 + BPHYT_RS22625 0.88 +0.6 633,318 - BPHYT_RS22625 0.88 +1.8 633,318 - BPHYT_RS22625 0.88 -1.8 633,507 + -0.6 633,508 - +0.7 633,508 - -0.4 633,520 + +0.4 633,664 + -2.4 633,665 - -0.5 633,751 + -0.9 633,791 - -1.1 633,794 + -1.6 633,795 - -2.7 633,800 - -0.8 633,853 + +0.4 633,858 + +0.8 633,859 - -0.1 633,859 - -1.0 633,876 + -0.1 633,876 + +0.4 633,959 - BPHYT_RS22630 0.12 -0.5 634,165 + BPHYT_RS22630 0.40 -0.5 634,165 + BPHYT_RS22630 0.40 +0.1 634,232 - BPHYT_RS22630 0.49 -0.6 634,525 - BPHYT_RS22630 0.88 -0.4 634,831 + BPHYT_RS22635 0.22 +0.0 634,832 - BPHYT_RS22635 0.22 +0.1 634,876 + BPHYT_RS22635 0.27 +1.1 634,877 - BPHYT_RS22635 0.27 +1.3 634,909 - BPHYT_RS22635 0.31 +1.3 635,132 - BPHYT_RS22635 0.55 -1.1 635,207 - BPHYT_RS22635 0.63 -0.1 635,472 + -0.7 635,473 - +0.5 635,514 + +0.8 635,529 - -0.6 635,576 - +0.1 635,576 - +0.2
Or see this region's nucleotide sequence