Experiment: 24hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22610 and BPHYT_RS22615 are separated by 64 nucleotides BPHYT_RS22615 and BPHYT_RS22620 are separated by 119 nucleotides BPHYT_RS22620 and BPHYT_RS22625 are separated by 156 nucleotides
BPHYT_RS22610: BPHYT_RS22610 - quinol oxidase, at 629,651 to 630,082
_RS22610
BPHYT_RS22615: BPHYT_RS22615 - hypothetical protein, at 630,147 to 630,419
_RS22615
BPHYT_RS22620: BPHYT_RS22620 - MFS transporter, at 630,539 to 632,014
_RS22620
BPHYT_RS22625: BPHYT_RS22625 - MFS transporter, at 632,171 to 633,472
_RS22625
Position (kb) 630
631
632
633 Strain fitness (log2 ratio) -2
-1
0
1
2 at 629.554 kb on + strand at 629.630 kb on - strand at 629.638 kb on - strand at 629.692 kb on + strand at 630.072 kb on + strand at 630.146 kb on - strand at 630.928 kb on - strand, within BPHYT_RS22620 at 631.066 kb on + strand, within BPHYT_RS22620 at 631.090 kb on - strand, within BPHYT_RS22620 at 631.116 kb on + strand, within BPHYT_RS22620 at 631.116 kb on + strand, within BPHYT_RS22620 at 631.119 kb on + strand, within BPHYT_RS22620 at 631.120 kb on - strand, within BPHYT_RS22620 at 631.138 kb on + strand, within BPHYT_RS22620 at 631.289 kb on + strand, within BPHYT_RS22620 at 631.290 kb on - strand, within BPHYT_RS22620 at 631.290 kb on - strand, within BPHYT_RS22620 at 631.752 kb on - strand, within BPHYT_RS22620 at 631.843 kb on - strand, within BPHYT_RS22620 at 631.925 kb on + strand at 631.926 kb on - strand at 632.026 kb on + strand at 632.027 kb on - strand at 632.027 kb on - strand at 632.241 kb on + strand at 632.241 kb on + strand at 632.242 kb on - strand at 632.242 kb on - strand at 632.317 kb on - strand, within BPHYT_RS22625 at 632.431 kb on - strand, within BPHYT_RS22625 at 632.481 kb on + strand, within BPHYT_RS22625 at 632.481 kb on + strand, within BPHYT_RS22625 at 632.482 kb on - strand, within BPHYT_RS22625 at 632.482 kb on - strand, within BPHYT_RS22625 at 632.482 kb on - strand, within BPHYT_RS22625 at 632.485 kb on - strand, within BPHYT_RS22625 at 632.485 kb on - strand, within BPHYT_RS22625 at 632.830 kb on - strand, within BPHYT_RS22625 at 632.988 kb on + strand, within BPHYT_RS22625 at 632.989 kb on - strand, within BPHYT_RS22625
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO2 MOI 1 remove 629,554 + -0.5 629,630 - +0.2 629,638 - -1.0 629,692 + +1.0 630,072 + +0.6 630,146 - -1.3 630,928 - BPHYT_RS22620 0.26 +0.2 631,066 + BPHYT_RS22620 0.36 -0.1 631,090 - BPHYT_RS22620 0.37 -1.3 631,116 + BPHYT_RS22620 0.39 -0.9 631,116 + BPHYT_RS22620 0.39 -0.0 631,119 + BPHYT_RS22620 0.39 +0.0 631,120 - BPHYT_RS22620 0.39 -0.6 631,138 + BPHYT_RS22620 0.41 -1.0 631,289 + BPHYT_RS22620 0.51 -2.0 631,290 - BPHYT_RS22620 0.51 -0.9 631,290 - BPHYT_RS22620 0.51 -0.6 631,752 - BPHYT_RS22620 0.82 +0.1 631,843 - BPHYT_RS22620 0.88 -0.0 631,925 + +0.8 631,926 - -1.1 632,026 + +0.8 632,027 - +0.4 632,027 - +1.8 632,241 + -1.3 632,241 + +0.3 632,242 - -1.0 632,242 - -0.8 632,317 - BPHYT_RS22625 0.11 +0.3 632,431 - BPHYT_RS22625 0.20 -1.2 632,481 + BPHYT_RS22625 0.24 -0.1 632,481 + BPHYT_RS22625 0.24 -2.3 632,482 - BPHYT_RS22625 0.24 +1.8 632,482 - BPHYT_RS22625 0.24 +0.9 632,482 - BPHYT_RS22625 0.24 -1.7 632,485 - BPHYT_RS22625 0.24 -0.2 632,485 - BPHYT_RS22625 0.24 +0.0 632,830 - BPHYT_RS22625 0.51 -0.8 632,988 + BPHYT_RS22625 0.63 +0.0 632,989 - BPHYT_RS22625 0.63 -1.0
Or see this region's nucleotide sequence