Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22345

Experiment: 24hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nt BPHYT_RS22345: BPHYT_RS22345 - hypothetical protein, at 568,495 to 570,741 _RS22345 Position (kb) 568 569 570 571Strain fitness (log2 ratio) -2 -1 0 1at 567.640 kb on - strandat 568.487 kb on + strandat 569.094 kb on + strand, within BPHYT_RS22345at 569.192 kb on + strand, within BPHYT_RS22345at 569.494 kb on + strand, within BPHYT_RS22345at 569.553 kb on + strand, within BPHYT_RS22345at 569.615 kb on - strand, within BPHYT_RS22345at 569.617 kb on + strand, within BPHYT_RS22345at 569.617 kb on + strand, within BPHYT_RS22345at 569.673 kb on + strand, within BPHYT_RS22345at 569.674 kb on - strand, within BPHYT_RS22345at 569.698 kb on + strand, within BPHYT_RS22345at 569.719 kb on + strand, within BPHYT_RS22345at 569.720 kb on - strand, within BPHYT_RS22345at 569.720 kb on - strand, within BPHYT_RS22345at 569.923 kb on + strand, within BPHYT_RS22345at 569.923 kb on + strand, within BPHYT_RS22345at 570.119 kb on - strand, within BPHYT_RS22345at 570.136 kb on + strand, within BPHYT_RS22345at 570.137 kb on - strand, within BPHYT_RS22345at 570.532 kb on + strandat 570.532 kb on + strandat 570.533 kb on - strandat 570.628 kb on - strandat 570.843 kb on + strandat 570.843 kb on + strandat 570.851 kb on - strandat 570.964 kb on - strandat 571.054 kb on + strandat 571.143 kb on - strandat 571.143 kb on - strandat 571.493 kb on + strandat 571.494 kb on - strandat 571.536 kb on + strandat 571.568 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO2 MOI 1
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567,640 - +0.4
568,487 + +0.4
569,094 + BPHYT_RS22345 0.27 +0.6
569,192 + BPHYT_RS22345 0.31 -0.2
569,494 + BPHYT_RS22345 0.44 -0.2
569,553 + BPHYT_RS22345 0.47 -0.7
569,615 - BPHYT_RS22345 0.50 +0.8
569,617 + BPHYT_RS22345 0.50 +0.1
569,617 + BPHYT_RS22345 0.50 +0.0
569,673 + BPHYT_RS22345 0.52 -1.4
569,674 - BPHYT_RS22345 0.52 -0.6
569,698 + BPHYT_RS22345 0.54 +0.4
569,719 + BPHYT_RS22345 0.54 -2.2
569,720 - BPHYT_RS22345 0.55 +0.7
569,720 - BPHYT_RS22345 0.55 -0.0
569,923 + BPHYT_RS22345 0.64 +0.2
569,923 + BPHYT_RS22345 0.64 +1.4
570,119 - BPHYT_RS22345 0.72 +0.8
570,136 + BPHYT_RS22345 0.73 -1.0
570,137 - BPHYT_RS22345 0.73 -1.1
570,532 + -1.4
570,532 + -1.4
570,533 - +0.4
570,628 - -0.4
570,843 + +0.1
570,843 + -0.7
570,851 - -0.3
570,964 - -0.2
571,054 + +0.8
571,143 - +0.7
571,143 - -0.6
571,493 + -1.0
571,494 - -0.3
571,536 + -0.9
571,568 + +0.5

Or see this region's nucleotide sequence