Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19795

Experiment: 24hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS19790 and BPHYT_RS19795 overlap by 4 nucleotidesBPHYT_RS19795 and BPHYT_RS19800 overlap by 8 nucleotides BPHYT_RS19790: BPHYT_RS19790 - peptidase M23, at 4,452,301 to 4,454,715 _RS19790 BPHYT_RS19795: BPHYT_RS19795 - chemotaxis protein CheW, at 4,454,712 to 4,455,392 _RS19795 BPHYT_RS19800: BPHYT_RS19800 - chemotaxis protein CheR, at 4,455,385 to 4,456,815 _RS19800 Position (kb) 4454 4455 4456Strain fitness (log2 ratio) -2 -1 0 1at 4453.733 kb on + strand, within BPHYT_RS19790at 4453.734 kb on - strandat 4453.734 kb on - strand, within BPHYT_RS19790at 4453.803 kb on + strand, within BPHYT_RS19790at 4453.803 kb on + strand, within BPHYT_RS19790at 4453.803 kb on + strand, within BPHYT_RS19790at 4453.803 kb on + strand, within BPHYT_RS19790at 4453.803 kb on + strand, within BPHYT_RS19790at 4453.804 kb on - strand, within BPHYT_RS19790at 4453.804 kb on - strand, within BPHYT_RS19790at 4453.804 kb on - strand, within BPHYT_RS19790at 4453.804 kb on - strand, within BPHYT_RS19790at 4454.002 kb on + strand, within BPHYT_RS19790at 4454.002 kb on + strand, within BPHYT_RS19790at 4454.003 kb on - strand, within BPHYT_RS19790at 4454.151 kb on + strand, within BPHYT_RS19790at 4454.242 kb on + strand, within BPHYT_RS19790at 4454.242 kb on + strand, within BPHYT_RS19790at 4454.295 kb on + strand, within BPHYT_RS19790at 4454.296 kb on - strand, within BPHYT_RS19790at 4455.030 kb on + strand, within BPHYT_RS19795at 4455.030 kb on + strand, within BPHYT_RS19795at 4455.031 kb on - strand, within BPHYT_RS19795at 4455.031 kb on - strand, within BPHYT_RS19795at 4455.031 kb on - strand, within BPHYT_RS19795at 4455.031 kb on - strand, within BPHYT_RS19795at 4455.031 kb on - strand, within BPHYT_RS19795at 4455.078 kb on - strand, within BPHYT_RS19795at 4455.078 kb on - strand, within BPHYT_RS19795at 4455.301 kb on - strand, within BPHYT_RS19795at 4455.301 kb on - strand, within BPHYT_RS19795at 4455.301 kb on - strand, within BPHYT_RS19795at 4455.301 kb on - strand, within BPHYT_RS19795at 4455.305 kb on - strand, within BPHYT_RS19795at 4455.512 kb on + strandat 4455.512 kb on + strandat 4455.513 kb on - strandat 4455.513 kb on - strandat 4455.584 kb on + strand, within BPHYT_RS19800at 4455.685 kb on + strand, within BPHYT_RS19800at 4455.685 kb on + strand, within BPHYT_RS19800at 4455.686 kb on - strand, within BPHYT_RS19800at 4455.782 kb on + strand, within BPHYT_RS19800at 4455.782 kb on + strand, within BPHYT_RS19800at 4455.783 kb on - strand, within BPHYT_RS19800at 4455.783 kb on - strand, within BPHYT_RS19800at 4455.967 kb on - strand, within BPHYT_RS19800at 4456.049 kb on - strand, within BPHYT_RS19800at 4456.149 kb on - strand, within BPHYT_RS19800at 4456.149 kb on - strand, within BPHYT_RS19800

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO2 MOI 1
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4,453,733 + BPHYT_RS19790 0.59 +0.4
4,453,734 - +1.3
4,453,734 - BPHYT_RS19790 0.59 +0.4
4,453,803 + BPHYT_RS19790 0.62 -0.4
4,453,803 + BPHYT_RS19790 0.62 +0.2
4,453,803 + BPHYT_RS19790 0.62 +0.1
4,453,803 + BPHYT_RS19790 0.62 +0.6
4,453,803 + BPHYT_RS19790 0.62 -1.8
4,453,804 - BPHYT_RS19790 0.62 +0.5
4,453,804 - BPHYT_RS19790 0.62 -0.3
4,453,804 - BPHYT_RS19790 0.62 -0.6
4,453,804 - BPHYT_RS19790 0.62 -0.7
4,454,002 + BPHYT_RS19790 0.70 -1.4
4,454,002 + BPHYT_RS19790 0.70 -0.3
4,454,003 - BPHYT_RS19790 0.70 -0.1
4,454,151 + BPHYT_RS19790 0.77 +0.4
4,454,242 + BPHYT_RS19790 0.80 -1.3
4,454,242 + BPHYT_RS19790 0.80 +0.2
4,454,295 + BPHYT_RS19790 0.83 -0.8
4,454,296 - BPHYT_RS19790 0.83 -1.1
4,455,030 + BPHYT_RS19795 0.47 +1.5
4,455,030 + BPHYT_RS19795 0.47 -1.9
4,455,031 - BPHYT_RS19795 0.47 +0.2
4,455,031 - BPHYT_RS19795 0.47 +0.5
4,455,031 - BPHYT_RS19795 0.47 -0.6
4,455,031 - BPHYT_RS19795 0.47 -0.8
4,455,031 - BPHYT_RS19795 0.47 -0.5
4,455,078 - BPHYT_RS19795 0.54 +0.2
4,455,078 - BPHYT_RS19795 0.54 +0.1
4,455,301 - BPHYT_RS19795 0.86 +0.2
4,455,301 - BPHYT_RS19795 0.86 -0.4
4,455,301 - BPHYT_RS19795 0.86 -0.0
4,455,301 - BPHYT_RS19795 0.86 +1.3
4,455,305 - BPHYT_RS19795 0.87 -0.1
4,455,512 + +0.0
4,455,512 + -1.5
4,455,513 - -0.1
4,455,513 - -1.0
4,455,584 + BPHYT_RS19800 0.14 -1.0
4,455,685 + BPHYT_RS19800 0.21 -0.7
4,455,685 + BPHYT_RS19800 0.21 +0.0
4,455,686 - BPHYT_RS19800 0.21 -0.6
4,455,782 + BPHYT_RS19800 0.28 -0.8
4,455,782 + BPHYT_RS19800 0.28 -0.1
4,455,783 - BPHYT_RS19800 0.28 -0.9
4,455,783 - BPHYT_RS19800 0.28 -1.7
4,455,967 - BPHYT_RS19800 0.41 -0.8
4,456,049 - BPHYT_RS19800 0.46 +0.4
4,456,149 - BPHYT_RS19800 0.53 -0.4
4,456,149 - BPHYT_RS19800 0.53 +1.7

Or see this region's nucleotide sequence