Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19780

Experiment: 24hr PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO2 MOI 1
4,449,272	+		BPHYT_RS19775	0.74	-1.6
4,449,291	-		BPHYT_RS19775	0.75	+0.3
4,449,356	+		BPHYT_RS19775	0.77	+0.1
4,449,357	-		BPHYT_RS19775	0.77	+0.4
4,449,360	-		BPHYT_RS19775	0.77	+0.9
4,449,360	-		BPHYT_RS19775	0.77	-0.9
4,449,383	+		BPHYT_RS19775	0.78	+0.3
4,449,383	+		BPHYT_RS19775	0.78	-0.3
4,449,384	-		BPHYT_RS19775	0.78	-2.2
4,449,384	-		BPHYT_RS19775	0.78	-2.7
4,449,450	-		BPHYT_RS19775	0.80	-0.5
4,449,450	-		BPHYT_RS19775	0.80	-0.3
4,449,559	-		BPHYT_RS19775	0.84	-0.5
4,449,559	-		BPHYT_RS19775	0.84	+0.3
4,449,559	-		BPHYT_RS19775	0.84	+0.1
4,449,681	-		BPHYT_RS19775	0.89	-0.1
4,449,681	-		BPHYT_RS19775	0.89	-0.1
4,449,735	-				-0.5
4,449,735	-				-0.7
4,449,738	+				-2.5
4,449,739	-				-0.4
4,449,739	-				-0.5
4,449,782	+				+0.7
4,449,782	+				-0.0
4,449,782	+				-0.6
4,449,944	+				-0.1
4,449,987	-				-0.7
4,450,037	+				+0.3
4,450,038	-				+0.2
4,450,043	+				+1.3
4,450,043	+				-0.3
4,450,044	-				-0.1
4,450,044	-				-0.7
4,450,044	-				-1.1
4,450,044	-				+0.4
4,450,047	-				+0.0
4,450,047	-				+1.3
4,450,088	+				+0.6
4,450,099	+				-0.4
4,450,471	+		BPHYT_RS19780	0.32	+0.7
4,450,472	-		BPHYT_RS19780	0.32	+0.7
4,450,472	-		BPHYT_RS19780	0.32	+0.0
4,450,475	+		BPHYT_RS19780	0.33	+0.4
4,450,475	+		BPHYT_RS19780	0.33	-0.5
4,450,475	+		BPHYT_RS19780	0.33	-1.7
4,450,481	+		BPHYT_RS19780	0.33	-0.8
4,450,482	-		BPHYT_RS19780	0.33	+0.3
4,450,482	-		BPHYT_RS19780	0.33	-0.3
4,450,483	+		BPHYT_RS19780	0.33	-0.5
4,450,483	+		BPHYT_RS19780	0.33	-1.0
4,450,567	+		BPHYT_RS19780	0.41	-1.2
4,450,568	-		BPHYT_RS19780	0.41	-0.3
4,450,775	-		BPHYT_RS19780	0.60	+0.1
4,450,987	+		BPHYT_RS19780	0.80	+0.8
4,451,251	-				+0.7
4,451,270	-				-1.5
4,451,368	+				+0.1
4,451,369	-				-0.2
4,451,408	-		BPHYT_RS19785	0.14	-1.5
4,451,430	-		BPHYT_RS19785	0.16	-1.9