Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19705

Experiment: 24hr PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO2 MOI 1
4,432,324	+				-0.5
4,432,325	-		BPHYT_RS19695	0.52	-1.3
4,432,454	+		BPHYT_RS19695	0.82	-0.3
4,432,454	+		BPHYT_RS19695	0.82	-0.4
4,432,455	-		BPHYT_RS19695	0.83	+0.3
4,432,534	-				-0.2
4,432,534	-				+0.7
4,432,534	-				-0.6
4,432,534	-				+1.3
4,432,714	+		BPHYT_RS19700	0.29	+0.1
4,432,731	+		BPHYT_RS19700	0.32	+2.3
4,432,731	+		BPHYT_RS19700	0.32	+0.0
4,432,732	-		BPHYT_RS19700	0.32	+0.2
4,432,788	-		BPHYT_RS19700	0.43	-0.0
4,432,788	-		BPHYT_RS19700	0.43	+0.8
4,433,042	+		BPHYT_RS19700	0.88	-0.7
4,433,043	-		BPHYT_RS19700	0.88	-0.7
4,433,043	-		BPHYT_RS19700	0.88	-0.6
4,433,045	+		BPHYT_RS19700	0.89	+0.2
4,433,046	-		BPHYT_RS19700	0.89	+1.0
4,433,046	-		BPHYT_RS19700	0.89	+0.3
4,433,046	-		BPHYT_RS19700	0.89	-0.2
4,433,046	-				-0.7
4,433,084	+				-1.7
4,433,192	+				+1.4
4,433,193	-				-1.0
4,433,231	+				-0.6
4,433,250	-				+0.0
4,433,250	-				+0.1
4,433,283	-				+0.7
4,433,364	+		BPHYT_RS19705	0.12	-0.2
4,433,512	-		BPHYT_RS19705	0.27	-0.9
4,433,575	+		BPHYT_RS19705	0.33	-0.2
4,433,575	+		BPHYT_RS19705	0.33	-0.9
4,433,576	-		BPHYT_RS19705	0.34	-2.8
4,433,576	-		BPHYT_RS19705	0.34	-0.8
4,433,596	+		BPHYT_RS19705	0.36	+1.5
4,433,743	+		BPHYT_RS19705	0.51	+1.3
4,433,794	+		BPHYT_RS19705	0.56	-1.2
4,433,794	+		BPHYT_RS19705	0.56	-0.3
4,433,794	+		BPHYT_RS19705	0.56	-0.7
4,433,795	-		BPHYT_RS19705	0.56	-2.0
4,433,795	-		BPHYT_RS19705	0.56	-1.4
4,433,795	-		BPHYT_RS19705	0.56	+2.3
4,433,795	-		BPHYT_RS19705	0.56	-1.5
4,433,795	-		BPHYT_RS19705	0.56	-0.5
4,433,795	-				-0.5
4,434,036	+		BPHYT_RS19705	0.81	-3.2
4,434,167	-				-0.8
4,434,213	-				+1.0
4,434,213	-				-0.4
4,434,217	-				-0.5
4,434,217	-				-0.6
4,434,217	-				-0.1
4,434,366	+				+0.3
4,434,366	+				-0.1
4,434,367	-				-0.4
4,434,394	+				-0.6
4,434,394	+				+0.1
4,434,394	+				-0.3
4,434,395	-				+0.2
4,434,395	-				-0.8
4,434,409	-				-0.2
4,434,462	+				+0.3
4,434,462	+				+1.0
4,434,463	-				+3.0
4,434,463	-				-0.5
4,434,543	+				-1.8
4,434,543	+				+0.2
4,434,544	-				-0.4
4,434,573	-		BPHYT_RS19710	0.11	+1.3