Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19460

Experiment: 24hr PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO2 MOI 1
4,377,459	+		BPHYT_RS19455	0.38	-0.9
4,377,459	+		BPHYT_RS19455	0.38	-1.2
4,377,459	+		BPHYT_RS19455	0.38	+0.7
4,377,460	-		BPHYT_RS19455	0.38	-1.4
4,377,465	+		BPHYT_RS19455	0.38	+0.7
4,377,465	+		BPHYT_RS19455	0.38	+0.7
4,377,466	-		BPHYT_RS19455	0.38	-0.5
4,377,466	-		BPHYT_RS19455	0.38	+0.5
4,377,566	-		BPHYT_RS19455	0.48	-1.0
4,377,678	+		BPHYT_RS19455	0.58	-1.1
4,377,678	+		BPHYT_RS19455	0.58	+4.3
4,377,696	+		BPHYT_RS19455	0.60	-0.1
4,377,696	+		BPHYT_RS19455	0.60	-0.4
4,377,696	+		BPHYT_RS19455	0.60	-0.1
4,377,696	+		BPHYT_RS19455	0.60	+0.6
4,377,697	-		BPHYT_RS19455	0.60	-0.7
4,377,757	+		BPHYT_RS19455	0.66	-0.7
4,377,757	+		BPHYT_RS19455	0.66	-1.6
4,377,758	-		BPHYT_RS19455	0.66	-0.1
4,377,758	-		BPHYT_RS19455	0.66	+0.3
4,377,811	-		BPHYT_RS19455	0.71	-1.1
4,377,811	-		BPHYT_RS19455	0.71	-0.6
4,377,978	+		BPHYT_RS19455	0.87	-0.6
4,378,110	-				+0.7
4,378,118	-				+0.3
4,378,323	+				-1.0
4,378,323	+				+2.5
4,378,323	+				-0.2
4,378,590	+		BPHYT_RS19460	0.23	-1.3
4,378,590	+		BPHYT_RS19460	0.23	-1.2
4,378,591	-		BPHYT_RS19460	0.23	-0.8
4,378,612	+		BPHYT_RS19460	0.25	+0.7
4,378,614	+		BPHYT_RS19460	0.25	-0.1
4,378,614	+		BPHYT_RS19460	0.25	+0.0
4,378,614	+		BPHYT_RS19460	0.25	+0.1
4,378,615	-		BPHYT_RS19460	0.25	-1.5
4,378,771	-		BPHYT_RS19460	0.39	+0.7
4,379,028	+		BPHYT_RS19460	0.61	-0.2
4,379,029	-		BPHYT_RS19460	0.61	-0.5
4,379,029	-		BPHYT_RS19460	0.61	+0.8
4,379,029	-		BPHYT_RS19460	0.61	-0.3
4,379,029	-		BPHYT_RS19460	0.61	-0.4
4,379,192	-		BPHYT_RS19460	0.75	+1.3
4,379,292	+		BPHYT_RS19460	0.84	+0.2
4,379,293	-		BPHYT_RS19460	0.84	-1.2
4,379,293	-		BPHYT_RS19460	0.84	+0.4
4,379,293	-		BPHYT_RS19460	0.84	+0.1
4,379,293	-		BPHYT_RS19460	0.84	-0.7
4,379,293	-		BPHYT_RS19460	0.84	-0.5
4,379,293	-		BPHYT_RS19460	0.84	+0.3
4,379,338	+		BPHYT_RS19460	0.88	-1.9
4,379,339	-		BPHYT_RS19460	0.88	+1.3
4,379,381	-				-0.6
4,379,381	-				-1.3
4,379,548	+				-0.1
4,379,549	-				+0.0
4,379,620	-				-0.8
4,379,634	+				-0.8
4,379,720	-				-0.3
4,379,749	-				+0.4
4,379,823	+				+0.7
4,379,823	+				+0.2
4,379,823	+				+0.0
4,379,844	-				+0.8
4,380,143	+		BPHYT_RS19465	0.25	+0.2
4,380,143	+		BPHYT_RS19465	0.25	+0.4
4,380,144	-		BPHYT_RS19465	0.25	+0.3
4,380,144	-		BPHYT_RS19465	0.25	+0.3
4,380,221	-		BPHYT_RS19465	0.32	-0.4
4,380,221	-		BPHYT_RS19465	0.32	-0.5
4,380,286	+		BPHYT_RS19465	0.37	-2.2
4,380,289	+		BPHYT_RS19465	0.37	-0.8
4,380,289	+		BPHYT_RS19465	0.37	+0.5
4,380,289	+		BPHYT_RS19465	0.37	-0.9
4,380,289	+		BPHYT_RS19465	0.37	+0.9
4,380,290	-		BPHYT_RS19465	0.37	+0.1
4,380,290	-		BPHYT_RS19465	0.37	-1.0
4,380,290	-		BPHYT_RS19465	0.37	-0.3
4,380,290	-		BPHYT_RS19465	0.37	-1.2
4,380,302	-		BPHYT_RS19465	0.38	-0.2