Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19455

Experiment: 24hr PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO2 MOI 1
4,376,232	-		BPHYT_RS19450	0.54	-0.0
4,376,232	-		BPHYT_RS19450	0.54	+0.2
4,376,232	-		BPHYT_RS19450	0.54	-1.6
4,376,232	-		BPHYT_RS19450	0.54	+0.7
4,376,375	+		BPHYT_RS19450	0.62	-0.3
4,376,376	-		BPHYT_RS19450	0.62	-0.0
4,376,376	-		BPHYT_RS19450	0.62	+0.2
4,376,411	+		BPHYT_RS19450	0.64	+0.8
4,376,412	-		BPHYT_RS19450	0.64	+0.0
4,376,511	+		BPHYT_RS19450	0.69	+0.3
4,376,511	+		BPHYT_RS19450	0.69	-0.5
4,376,511	+		BPHYT_RS19450	0.69	-0.0
4,376,512	-		BPHYT_RS19450	0.69	-0.3
4,376,515	-		BPHYT_RS19450	0.70	+0.2
4,376,567	+		BPHYT_RS19450	0.72	+0.7
4,376,567	+		BPHYT_RS19450	0.72	+0.6
4,376,568	-		BPHYT_RS19450	0.73	+0.9
4,376,568	-		BPHYT_RS19450	0.73	-2.1
4,376,568	-		BPHYT_RS19450	0.73	+1.2
4,376,568	-		BPHYT_RS19450	0.73	-0.3
4,376,570	+		BPHYT_RS19450	0.73	+0.8
4,376,570	+		BPHYT_RS19450	0.73	+0.6
4,376,570	+		BPHYT_RS19450	0.73	+0.2
4,376,571	-		BPHYT_RS19450	0.73	-0.2
4,376,571	-		BPHYT_RS19450	0.73	-0.1
4,376,574	+		BPHYT_RS19450	0.73	+0.7
4,376,575	-		BPHYT_RS19450	0.73	+0.5
4,376,575	-		BPHYT_RS19450	0.73	+1.3
4,376,639	+		BPHYT_RS19450	0.77	+0.1
4,376,640	-		BPHYT_RS19450	0.77	+4.3
4,376,640	-				-0.3
4,376,640	-		BPHYT_RS19450	0.77	-0.5
4,376,640	-		BPHYT_RS19450	0.77	-1.0
4,376,814	-		BPHYT_RS19450	0.86	-1.6
4,376,931	-				-0.0
4,376,942	+				-0.1
4,376,942	+				+0.1
4,376,943	-				-0.1
4,376,943	-				-1.2
4,376,943	-				+0.2
4,376,943	-				+0.0
4,377,148	+				+0.6
4,377,148	+				-0.8
4,377,148	+				+0.0
4,377,150	+				+1.9
4,377,150	+				+0.9
4,377,150	+				-0.0
4,377,150	+				-0.2
4,377,150	+				-0.7
4,377,151	-				-0.7
4,377,151	-				+0.6
4,377,174	+		BPHYT_RS19455	0.11	-1.0
4,377,174	+		BPHYT_RS19455	0.11	+1.3
4,377,175	-		BPHYT_RS19455	0.11	-1.1
4,377,222	+		BPHYT_RS19455	0.15	+0.7
4,377,291	+		BPHYT_RS19455	0.22	-0.3
4,377,291	+		BPHYT_RS19455	0.22	-0.3
4,377,291	+		BPHYT_RS19455	0.22	+1.3
4,377,292	-		BPHYT_RS19455	0.22	-0.1
4,377,459	+		BPHYT_RS19455	0.38	-0.9
4,377,459	+		BPHYT_RS19455	0.38	-1.2
4,377,459	+		BPHYT_RS19455	0.38	+0.7
4,377,460	-		BPHYT_RS19455	0.38	-1.4
4,377,465	+		BPHYT_RS19455	0.38	+0.7
4,377,465	+		BPHYT_RS19455	0.38	+0.7
4,377,466	-		BPHYT_RS19455	0.38	-0.5
4,377,466	-		BPHYT_RS19455	0.38	+0.5
4,377,566	-		BPHYT_RS19455	0.48	-1.0
4,377,678	+		BPHYT_RS19455	0.58	-1.1
4,377,678	+		BPHYT_RS19455	0.58	+4.3
4,377,696	+		BPHYT_RS19455	0.60	-0.1
4,377,696	+		BPHYT_RS19455	0.60	-0.4
4,377,696	+		BPHYT_RS19455	0.60	-0.1
4,377,696	+		BPHYT_RS19455	0.60	+0.6
4,377,697	-		BPHYT_RS19455	0.60	-0.7
4,377,757	+		BPHYT_RS19455	0.66	-0.7
4,377,757	+		BPHYT_RS19455	0.66	-1.6
4,377,758	-		BPHYT_RS19455	0.66	-0.1
4,377,758	-		BPHYT_RS19455	0.66	+0.3
4,377,811	-		BPHYT_RS19455	0.71	-1.1
4,377,811	-		BPHYT_RS19455	0.71	-0.6
4,377,978	+		BPHYT_RS19455	0.87	-0.6
4,378,110	-				+0.7
4,378,118	-				+0.3
4,378,323	+				-1.0
4,378,323	+				+2.5
4,378,323	+				-0.2
4,378,590	+		BPHYT_RS19460	0.23	-1.3
4,378,590	+		BPHYT_RS19460	0.23	-1.2
4,378,591	-		BPHYT_RS19460	0.23	-0.8
4,378,612	+		BPHYT_RS19460	0.25	+0.7
4,378,614	+		BPHYT_RS19460	0.25	-0.1
4,378,614	+		BPHYT_RS19460	0.25	+0.0
4,378,614	+		BPHYT_RS19460	0.25	+0.1
4,378,615	-		BPHYT_RS19460	0.25	-1.5
4,378,771	-		BPHYT_RS19460	0.39	+0.7
4,379,028	+		BPHYT_RS19460	0.61	-0.2
4,379,029	-		BPHYT_RS19460	0.61	-0.5
4,379,029	-		BPHYT_RS19460	0.61	+0.8
4,379,029	-		BPHYT_RS19460	0.61	-0.3
4,379,029	-		BPHYT_RS19460	0.61	-0.4