Experiment: 24hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19330 and BPHYT_RS19335 are separated by 139 nucleotides BPHYT_RS19335 and BPHYT_RS19340 are separated by 30 nucleotides
BPHYT_RS19330: BPHYT_RS19330 - glycine cleavage system P protein (EC 1.4.4.2) (from data) , at 4,339,951 to 4,342,887
_RS19330
BPHYT_RS19335: BPHYT_RS19335 - hypothetical protein, at 4,343,027 to 4,344,157
_RS19335
BPHYT_RS19340: BPHYT_RS19340 - L-serine ammonia-lyase (EC 4.3.1.17) (from data) , at 4,344,188 to 4,345,576
_RS19340
Position (kb)
4343
4344
4345 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4342.039 kb on + strand, within BPHYT_RS19330 at 4342.039 kb on + strand, within BPHYT_RS19330 at 4342.039 kb on + strand, within BPHYT_RS19330 at 4342.040 kb on - strand, within BPHYT_RS19330 at 4342.229 kb on - strand, within BPHYT_RS19330 at 4342.309 kb on + strand, within BPHYT_RS19330 at 4342.309 kb on + strand, within BPHYT_RS19330 at 4342.309 kb on + strand, within BPHYT_RS19330 at 4342.310 kb on - strand, within BPHYT_RS19330 at 4342.414 kb on + strand, within BPHYT_RS19330 at 4342.522 kb on + strand, within BPHYT_RS19330 at 4342.523 kb on - strand, within BPHYT_RS19330 at 4342.801 kb on + strand at 4342.879 kb on + strand at 4342.879 kb on + strand at 4343.444 kb on + strand, within BPHYT_RS19335 at 4343.445 kb on - strand, within BPHYT_RS19335 at 4343.445 kb on - strand, within BPHYT_RS19335 at 4343.795 kb on + strand, within BPHYT_RS19335 at 4343.795 kb on + strand, within BPHYT_RS19335 at 4343.796 kb on - strand, within BPHYT_RS19335 at 4344.083 kb on - strand at 4344.167 kb on - strand at 4344.185 kb on + strand at 4344.185 kb on + strand at 4344.185 kb on + strand at 4344.185 kb on + strand at 4344.186 kb on - strand at 4344.338 kb on + strand, within BPHYT_RS19340 at 4344.339 kb on - strand, within BPHYT_RS19340 at 4344.617 kb on + strand, within BPHYT_RS19340 at 4344.618 kb on - strand, within BPHYT_RS19340 at 4344.618 kb on - strand, within BPHYT_RS19340 at 4344.618 kb on - strand, within BPHYT_RS19340 at 4344.664 kb on + strand, within BPHYT_RS19340 at 4344.891 kb on + strand, within BPHYT_RS19340 at 4345.011 kb on - strand, within BPHYT_RS19340 at 4345.106 kb on + strand, within BPHYT_RS19340 at 4345.107 kb on - strand, within BPHYT_RS19340 at 4345.107 kb on - strand, within BPHYT_RS19340 at 4345.109 kb on + strand, within BPHYT_RS19340 at 4345.109 kb on + strand, within BPHYT_RS19340 at 4345.110 kb on - strand, within BPHYT_RS19340 at 4345.110 kb on - strand, within BPHYT_RS19340 at 4345.110 kb on - strand, within BPHYT_RS19340
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO2 MOI 1 remove 4,342,039 + BPHYT_RS19330 0.71 +1.5 4,342,039 + BPHYT_RS19330 0.71 -0.3 4,342,039 + BPHYT_RS19330 0.71 -0.3 4,342,040 - BPHYT_RS19330 0.71 -0.1 4,342,229 - BPHYT_RS19330 0.78 -3.0 4,342,309 + BPHYT_RS19330 0.80 +0.4 4,342,309 + BPHYT_RS19330 0.80 +0.0 4,342,309 + BPHYT_RS19330 0.80 +1.3 4,342,310 - BPHYT_RS19330 0.80 -1.3 4,342,414 + BPHYT_RS19330 0.84 -0.6 4,342,522 + BPHYT_RS19330 0.88 -0.3 4,342,523 - BPHYT_RS19330 0.88 +0.6 4,342,801 + -1.1 4,342,879 + -0.7 4,342,879 + -0.1 4,343,444 + BPHYT_RS19335 0.37 -0.7 4,343,445 - BPHYT_RS19335 0.37 +0.7 4,343,445 - BPHYT_RS19335 0.37 -0.5 4,343,795 + BPHYT_RS19335 0.68 -0.3 4,343,795 + BPHYT_RS19335 0.68 +0.3 4,343,796 - BPHYT_RS19335 0.68 +0.7 4,344,083 - -1.6 4,344,167 - -1.3 4,344,185 + -1.0 4,344,185 + -0.2 4,344,185 + -0.3 4,344,185 + -0.7 4,344,186 - -1.4 4,344,338 + BPHYT_RS19340 0.11 -1.4 4,344,339 - BPHYT_RS19340 0.11 +0.5 4,344,617 + BPHYT_RS19340 0.31 +0.0 4,344,618 - BPHYT_RS19340 0.31 +0.3 4,344,618 - BPHYT_RS19340 0.31 +1.4 4,344,618 - BPHYT_RS19340 0.31 -0.8 4,344,664 + BPHYT_RS19340 0.34 +0.0 4,344,891 + BPHYT_RS19340 0.51 +0.4 4,345,011 - BPHYT_RS19340 0.59 -0.7 4,345,106 + BPHYT_RS19340 0.66 -0.2 4,345,107 - BPHYT_RS19340 0.66 -1.0 4,345,107 - BPHYT_RS19340 0.66 +0.5 4,345,109 + BPHYT_RS19340 0.66 -1.4 4,345,109 + BPHYT_RS19340 0.66 +0.9 4,345,110 - BPHYT_RS19340 0.66 +1.3 4,345,110 - BPHYT_RS19340 0.66 -0.4 4,345,110 - BPHYT_RS19340 0.66 +1.0
Or see this region's nucleotide sequence