Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19140

Experiment: 24hr PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO2 MOI 1
4,293,075	+		BPHYT_RS19135	0.15	+0.3
4,293,076	-		BPHYT_RS19135	0.15	-0.7
4,293,076	-		BPHYT_RS19135	0.15	-0.3
4,293,105	+		BPHYT_RS19135	0.18	+0.3
4,293,158	-		BPHYT_RS19135	0.24	-0.2
4,293,295	+		BPHYT_RS19135	0.38	-0.1
4,293,295	+		BPHYT_RS19135	0.38	+0.3
4,293,373	+		BPHYT_RS19135	0.45	+0.0
4,293,388	+		BPHYT_RS19135	0.47	+0.2
4,293,389	-		BPHYT_RS19135	0.47	-1.3
4,293,424	+		BPHYT_RS19135	0.51	-0.8
4,293,514	+		BPHYT_RS19135	0.60	-0.3
4,293,598	+		BPHYT_RS19135	0.68	-0.2
4,293,598	+		BPHYT_RS19135	0.68	-2.8
4,293,598	+		BPHYT_RS19135	0.68	-0.6
4,293,599	-		BPHYT_RS19135	0.68	-0.3
4,293,599	-		BPHYT_RS19135	0.68	-0.0
4,293,600	+		BPHYT_RS19135	0.68	-0.9
4,293,600	+		BPHYT_RS19135	0.68	-1.9
4,293,600	+		BPHYT_RS19135	0.68	-1.4
4,293,601	-		BPHYT_RS19135	0.68	-2.9
4,293,601	-		BPHYT_RS19135	0.68	-1.1
4,293,611	-		BPHYT_RS19135	0.69	+0.1
4,293,613	-		BPHYT_RS19135	0.70	+0.3
4,293,613	-		BPHYT_RS19135	0.70	+1.3
4,293,613	-		BPHYT_RS19135	0.70	-1.0
4,293,643	+		BPHYT_RS19135	0.73	+0.2
4,293,644	-		BPHYT_RS19135	0.73	-0.7
4,293,722	-		BPHYT_RS19135	0.81	+0.1
4,293,722	-		BPHYT_RS19135	0.81	+0.7
4,293,803	+		BPHYT_RS19135	0.89	-0.8
4,293,872	-				+0.3
4,294,104	-		BPHYT_RS19140	0.20	+0.9
4,294,180	-		BPHYT_RS19140	0.30	+0.9
4,294,190	+		BPHYT_RS19140	0.32	+0.4
4,294,191	-		BPHYT_RS19140	0.32	-0.3
4,294,191	-		BPHYT_RS19140	0.32	-0.5
4,294,411	-		BPHYT_RS19140	0.63	+0.4
4,294,462	-		BPHYT_RS19140	0.71	-0.2
4,294,567	-		BPHYT_RS19140	0.86	-0.3
4,294,567	-		BPHYT_RS19140	0.86	+2.9
4,294,599	+				-0.1
4,294,599	+				+0.7
4,294,599	+				+0.8
4,294,681	+				-0.5
4,294,685	-				-0.8
4,294,741	-				-0.4
4,295,067	-		BPHYT_RS19145	0.61	-0.5
4,295,389	+		BPHYT_RS19150	0.11	+0.6
4,295,477	-		BPHYT_RS19150	0.22	-0.7
4,295,547	+		BPHYT_RS19150	0.31	+0.6
4,295,547	+		BPHYT_RS19150	0.31	-0.5
4,295,548	-		BPHYT_RS19150	0.31	-0.7
4,295,548	-		BPHYT_RS19150	0.31	-0.3
4,295,548	-		BPHYT_RS19150	0.31	+1.0
4,295,548	-		BPHYT_RS19150	0.31	-0.7
4,295,549	+		BPHYT_RS19150	0.31	-0.1
4,295,608	-		BPHYT_RS19150	0.38	-1.3
4,295,608	-		BPHYT_RS19150	0.38	-0.2