Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17525

Experiment: 24hr PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO2 MOI 1
3,968,459	+		BPHYT_RS17520	0.15	+0.2
3,968,503	-		BPHYT_RS17520	0.20	-0.3
3,968,758	+		BPHYT_RS17520	0.49	-2.5
3,968,758	+		BPHYT_RS17520	0.49	+0.2
3,968,916	+		BPHYT_RS17520	0.68	-0.3
3,968,916	+		BPHYT_RS17520	0.68	-1.8
3,968,917	-		BPHYT_RS17520	0.68	+0.2
3,968,918	+		BPHYT_RS17520	0.68	+1.7
3,969,058	+		BPHYT_RS17520	0.84	-0.5
3,969,058	+		BPHYT_RS17520	0.84	-0.8
3,969,058	+		BPHYT_RS17520	0.84	+1.7
3,969,059	-		BPHYT_RS17520	0.84	-0.3
3,969,207	-				-0.3
3,969,209	+				-0.8
3,969,210	-				+0.9
3,969,252	+				-1.9
3,969,278	+				+0.3
3,969,279	-				+0.2
3,969,291	+				+0.3
3,969,536	-		BPHYT_RS17525	0.71	-1.3
3,969,583	+		BPHYT_RS17525	0.87	-2.7
3,969,584	-		BPHYT_RS17525	0.87	-1.5
3,969,734	+		BPHYT_RS17530	0.11	-0.5
3,969,817	+		BPHYT_RS17530	0.25	-0.8
3,969,818	-		BPHYT_RS17530	0.25	-2.0
3,969,818	-		BPHYT_RS17530	0.25	-0.4
3,970,090	+		BPHYT_RS17530	0.70	+0.4
3,970,090	+		BPHYT_RS17530	0.70	+0.2
3,970,146	-		BPHYT_RS17530	0.80	-1.1
3,970,266	-				-0.2
3,970,266	-				-1.0
3,970,299	+				-0.2
3,970,372	+				+0.9
3,970,372	+				-1.3
3,970,372	+				+0.2
3,970,372	+				-1.3
3,970,372	+				-1.5
3,970,372	+				+0.0
3,970,372	+				-0.2
3,970,373	-				+1.2
3,970,373	-				-0.7
3,970,373	-				-0.7
3,970,373	-				-1.0
3,970,373	-				+1.1
3,970,373	-				+0.1
3,970,374	+				-1.1
3,970,375	-				+0.2
3,970,375	-				-0.1
3,970,381	-				-0.9
3,970,393	+				-0.6
3,970,393	+				-0.7
3,970,393	+				-0.1
3,970,394	-				+0.8
3,970,394	-				-0.1
3,970,439	-				-1.2