Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12380

Experiment: 24hr PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO2 MOI 1
2,821,497	+		BPHYT_RS12375	0.32	-0.2
2,821,498	-		BPHYT_RS12375	0.32	-1.0
2,821,498	-		BPHYT_RS12375	0.32	-0.5
2,821,498	-		BPHYT_RS12375	0.32	+2.4
2,821,498	-		BPHYT_RS12375	0.32	-0.2
2,821,537	-		BPHYT_RS12375	0.35	+0.2
2,821,685	-		BPHYT_RS12375	0.49	+0.7
2,821,894	-		BPHYT_RS12375	0.67	+2.4
2,821,955	-		BPHYT_RS12375	0.73	+0.2
2,821,956	+		BPHYT_RS12375	0.73	-1.1
2,821,968	+		BPHYT_RS12375	0.74	-0.4
2,822,057	+		BPHYT_RS12375	0.82	+0.2
2,822,301	-				+0.0
2,822,352	-				-1.1
2,822,580	-		BPHYT_RS12380	0.31	-0.2
2,822,685	-		BPHYT_RS12380	0.42	+1.8
2,822,912	+		BPHYT_RS12380	0.63	-2.3
2,822,913	-		BPHYT_RS12380	0.63	-1.9
2,823,281	+				-0.5
2,823,281	+				-1.3
2,823,282	-				-0.3
2,823,282	-				-0.4
2,823,282	-				-1.1
2,823,282	-				+0.3
2,823,342	+				-0.1
2,823,401	-				-2.1
2,823,423	+				+1.5
2,823,504	+				-0.2
2,823,505	-				+2.4
2,823,754	-		BPHYT_RS12385	0.22	-1.9
2,824,131	+		BPHYT_RS12385	0.43	-0.2
2,824,131	+		BPHYT_RS12385	0.43	-2.3
2,824,261	+		BPHYT_RS12385	0.50	-1.2