Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10850
Experiment: 24hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 24hr PHYTO2 MOI 1 |
---|---|---|---|---|---|
remove | |||||
2,467,153 | + | BPHYT_RS10845 | 0.61 | -0.4 | |
2,467,726 | + | -2.1 | |||
2,467,726 | + | -0.4 | |||
2,467,727 | - | +0.0 | |||
2,467,805 | - | -0.4 | |||
2,468,224 | + | BPHYT_RS10850 | 0.19 | -2.1 | |
2,468,832 | + | BPHYT_RS10850 | 0.81 | -2.3 | |
2,469,423 | + | BPHYT_RS10855 | 0.28 | +0.7 | |
2,469,423 | + | BPHYT_RS10855 | 0.28 | -1.9 | |
2,469,424 | - | BPHYT_RS10855 | 0.28 | +1.2 |
Or see this region's nucleotide sequence