Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09675

Experiment: 24hr PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO2 MOI 1
2,192,939	+		BPHYT_RS09670	0.44	+0.8
2,192,939	+				+0.4
2,192,940	-		BPHYT_RS09670	0.44	-1.1
2,192,990	+		BPHYT_RS09670	0.48	-2.0
2,192,991	-		BPHYT_RS09670	0.48	-0.9
2,192,991	-		BPHYT_RS09670	0.48	+0.7
2,193,111	-		BPHYT_RS09670	0.60	-0.6
2,193,219	+		BPHYT_RS09670	0.70	-1.2
2,193,347	-		BPHYT_RS09670	0.82	-0.4
2,193,464	+				-0.2
2,193,464	+				+2.8
2,193,465	-				-0.2
2,193,465	-				+1.5
2,193,476	+				-0.3
2,193,526	+				+0.7
2,193,527	-				+1.0
2,193,850	+				+0.8
2,193,851	-				-1.2
2,193,889	-				+0.3
2,193,889	-				+0.6
2,194,126	+		BPHYT_RS09675	0.47	+0.7
2,194,127	-		BPHYT_RS09675	0.47	-0.6
2,194,150	-		BPHYT_RS09675	0.51	-1.5
2,194,171	+		BPHYT_RS09675	0.55	-0.3
2,194,171	+		BPHYT_RS09675	0.55	-0.4
2,194,268	+		BPHYT_RS09675	0.71	+0.8
2,194,269	-		BPHYT_RS09675	0.71	+0.6
2,194,500	-				-0.1
2,194,501	+				-0.7
2,194,945	-		BPHYT_RS09685	0.16	-0.0
2,195,008	+		BPHYT_RS09685	0.30	-0.1
2,195,009	-		BPHYT_RS09685	0.30	-1.0
2,195,009	-		BPHYT_RS09685	0.30	+0.4
2,195,038	+		BPHYT_RS09685	0.36	-1.4
2,195,039	-		BPHYT_RS09685	0.36	-0.6
2,195,212	+		BPHYT_RS09685	0.75	-1.8
2,195,320	-				-2.3
2,195,378	-				+1.4
2,195,385	+				+1.0
2,195,385	+				-2.4