Experiment: 24hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03870 and BPHYT_RS03875 are separated by 69 nucleotides BPHYT_RS03875 and BPHYT_RS03880 are separated by 70 nucleotides BPHYT_RS03880 and BPHYT_RS03885 are separated by 243 nucleotides BPHYT_RS03885 and BPHYT_RS03890 are separated by 93 nucleotides
BPHYT_RS03870: BPHYT_RS03870 - xanthine dehydrogenase, molybdopterin binding subunit (EC 1.17.1.4) <small>(from data)</small>, at 877,257 to 879,623
_RS03870
BPHYT_RS03875: BPHYT_RS03875 - dehydrogenase, at 879,693 to 880,259
_RS03875
BPHYT_RS03880: BPHYT_RS03880 - LysR family transcriptional regulator, at 880,330 to 881,310
_RS03880
BPHYT_RS03885: BPHYT_RS03885 - 2-hydroxychromene-2-carboxylate isomerase, at 881,554 to 882,204
_RS03885
BPHYT_RS03890: BPHYT_RS03890 - C4-dicarboxylate ABC transporter substrate-binding protein, at 882,298 to 883,791
_RS03890
Position (kb) 880
881
882 Strain fitness (log2 ratio) -2
-1
0
1 at 879.354 kb on + strand, within BPHYT_RS03870 at 879.355 kb on - strand, within BPHYT_RS03870 at 879.631 kb on + strand at 879.764 kb on + strand, within BPHYT_RS03875 at 879.765 kb on - strand, within BPHYT_RS03875 at 879.765 kb on - strand, within BPHYT_RS03875 at 879.765 kb on - strand, within BPHYT_RS03875 at 880.402 kb on - strand at 880.479 kb on - strand, within BPHYT_RS03880 at 880.542 kb on - strand, within BPHYT_RS03880 at 880.730 kb on + strand, within BPHYT_RS03880 at 880.730 kb on + strand, within BPHYT_RS03880 at 880.730 kb on + strand, within BPHYT_RS03880 at 880.730 kb on + strand, within BPHYT_RS03880 at 880.889 kb on + strand, within BPHYT_RS03880 at 880.989 kb on - strand, within BPHYT_RS03880 at 881.112 kb on - strand, within BPHYT_RS03880 at 881.283 kb on + strand at 881.419 kb on + strand at 881.506 kb on + strand at 881.507 kb on - strand at 881.530 kb on - strand at 881.549 kb on - strand at 881.555 kb on + strand at 881.642 kb on + strand, within BPHYT_RS03885 at 881.643 kb on - strand, within BPHYT_RS03885 at 881.643 kb on - strand, within BPHYT_RS03885 at 881.739 kb on + strand, within BPHYT_RS03885 at 881.875 kb on + strand, within BPHYT_RS03885 at 881.875 kb on + strand, within BPHYT_RS03885 at 881.967 kb on - strand, within BPHYT_RS03885 at 881.967 kb on - strand, within BPHYT_RS03885 at 881.967 kb on - strand, within BPHYT_RS03885 at 881.967 kb on - strand, within BPHYT_RS03885 at 882.066 kb on - strand, within BPHYT_RS03885 at 882.145 kb on - strand at 882.204 kb on + strand at 882.204 kb on + strand at 882.205 kb on - strand at 882.248 kb on - strand at 882.261 kb on + strand at 882.303 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO2 MOI 1 remove 879,354 + BPHYT_RS03870 0.89 -0.5 879,355 - BPHYT_RS03870 0.89 -0.2 879,631 + -1.9 879,764 + BPHYT_RS03875 0.13 -1.6 879,765 - BPHYT_RS03875 0.13 -0.1 879,765 - BPHYT_RS03875 0.13 -1.5 879,765 - BPHYT_RS03875 0.13 +0.4 880,402 - -1.5 880,479 - BPHYT_RS03880 0.15 -0.8 880,542 - BPHYT_RS03880 0.22 -0.4 880,730 + BPHYT_RS03880 0.41 +0.5 880,730 + BPHYT_RS03880 0.41 -0.7 880,730 + BPHYT_RS03880 0.41 -1.2 880,730 + BPHYT_RS03880 0.41 -0.0 880,889 + BPHYT_RS03880 0.57 +0.5 880,989 - BPHYT_RS03880 0.67 -0.8 881,112 - BPHYT_RS03880 0.80 -1.1 881,283 + +0.4 881,419 + +0.7 881,506 + +0.1 881,507 - +0.1 881,530 - +0.0 881,549 - +0.3 881,555 + -0.0 881,642 + BPHYT_RS03885 0.14 -1.2 881,643 - BPHYT_RS03885 0.14 -0.1 881,643 - BPHYT_RS03885 0.14 +0.3 881,739 + BPHYT_RS03885 0.28 -1.8 881,875 + BPHYT_RS03885 0.49 +0.3 881,875 + BPHYT_RS03885 0.49 -0.7 881,967 - BPHYT_RS03885 0.63 -0.2 881,967 - BPHYT_RS03885 0.63 -0.5 881,967 - BPHYT_RS03885 0.63 +1.3 881,967 - BPHYT_RS03885 0.63 +0.9 882,066 - BPHYT_RS03885 0.79 +0.9 882,145 - -1.4 882,204 + +1.3 882,204 + -1.2 882,205 - +0.1 882,248 - +1.0 882,261 + -2.2 882,303 - +0.6
Or see this region's nucleotide sequence