Experiment: 24hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03640 and BPHYT_RS03645 are separated by 84 nucleotides BPHYT_RS03645 and BPHYT_RS03650 are separated by 45 nucleotides
BPHYT_RS03640: BPHYT_RS03640 - phosphoribosylformylglycinamidine cyclo-ligase, at 826,890 to 827,957
_RS03640
BPHYT_RS03645: BPHYT_RS03645 - tRNA dimethylallyltransferase, at 828,042 to 828,989
_RS03645
BPHYT_RS03650: BPHYT_RS03650 - DNA mismatch repair protein, at 829,035 to 831,098
_RS03650
Position (kb) 828
829 Strain fitness (log2 ratio) -2
-1
0
1 at 827.241 kb on + strand, within BPHYT_RS03640 at 827.364 kb on + strand, within BPHYT_RS03640 at 827.427 kb on - strand, within BPHYT_RS03640 at 827.597 kb on + strand, within BPHYT_RS03640 at 827.598 kb on - strand, within BPHYT_RS03640 at 827.684 kb on + strand, within BPHYT_RS03640 at 827.955 kb on + strand at 827.986 kb on + strand at 828.196 kb on + strand, within BPHYT_RS03645 at 828.271 kb on - strand, within BPHYT_RS03645 at 828.474 kb on - strand, within BPHYT_RS03645 at 828.667 kb on + strand, within BPHYT_RS03645 at 828.978 kb on - strand at 829.084 kb on + strand at 829.085 kb on - strand at 829.258 kb on + strand, within BPHYT_RS03650 at 829.259 kb on - strand, within BPHYT_RS03650 at 829.508 kb on - strand, within BPHYT_RS03650 at 829.508 kb on - strand, within BPHYT_RS03650 at 829.576 kb on + strand, within BPHYT_RS03650 at 829.577 kb on - strand, within BPHYT_RS03650 at 829.577 kb on - strand, within BPHYT_RS03650 at 829.667 kb on - strand, within BPHYT_RS03650
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO2 MOI 1 remove 827,241 + BPHYT_RS03640 0.33 -2.2 827,364 + BPHYT_RS03640 0.44 -0.4 827,427 - BPHYT_RS03640 0.50 -1.4 827,597 + BPHYT_RS03640 0.66 +1.3 827,598 - BPHYT_RS03640 0.66 -0.0 827,684 + BPHYT_RS03640 0.74 +1.3 827,955 + -0.9 827,986 + -1.9 828,196 + BPHYT_RS03645 0.16 -0.7 828,271 - BPHYT_RS03645 0.24 -0.9 828,474 - BPHYT_RS03645 0.46 -2.5 828,667 + BPHYT_RS03645 0.66 -1.6 828,978 - +0.4 829,084 + -0.5 829,085 - +0.3 829,258 + BPHYT_RS03650 0.11 -0.2 829,259 - BPHYT_RS03650 0.11 +0.4 829,508 - BPHYT_RS03650 0.23 +0.0 829,508 - BPHYT_RS03650 0.23 +0.6 829,576 + BPHYT_RS03650 0.26 -0.3 829,577 - BPHYT_RS03650 0.26 -0.0 829,577 - BPHYT_RS03650 0.26 -0.3 829,667 - BPHYT_RS03650 0.31 -1.6
Or see this region's nucleotide sequence