Experiment: 24hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03575 and BPHYT_RS03580 are separated by 8 nucleotides BPHYT_RS03580 and BPHYT_RS03585 are separated by 523 nucleotides BPHYT_RS03585 and BPHYT_RS03590 are separated by 483 nucleotides
BPHYT_RS03575: BPHYT_RS03575 - ferrochelatase, at 811,762 to 812,832
_RS03575
BPHYT_RS03580: BPHYT_RS03580 - RNA-binding protein S4, at 812,841 to 813,248
_RS03580
BPHYT_RS03585: BPHYT_RS03585 - protein GrpE, at 813,772 to 814,356
_RS03585
BPHYT_RS03590: BPHYT_RS03590 - chaperone protein DnaK, at 814,840 to 816,792
_RS03590
Position (kb) 813
814
815 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 812.818 kb on - strand at 813.165 kb on + strand, within BPHYT_RS03580 at 813.165 kb on + strand, within BPHYT_RS03580 at 813.166 kb on - strand, within BPHYT_RS03580 at 813.166 kb on - strand, within BPHYT_RS03580 at 813.384 kb on + strand at 813.409 kb on - strand at 813.439 kb on + strand at 813.439 kb on + strand at 813.440 kb on - strand at 813.442 kb on - strand at 813.442 kb on - strand at 813.492 kb on - strand at 813.492 kb on - strand at 813.492 kb on - strand at 813.492 kb on - strand at 813.492 kb on - strand at 813.492 kb on - strand at 813.492 kb on - strand at 813.502 kb on + strand at 813.502 kb on + strand at 813.502 kb on + strand at 813.503 kb on - strand at 813.503 kb on - strand at 813.503 kb on - strand at 813.550 kb on - strand at 813.558 kb on + strand at 813.559 kb on - strand at 813.751 kb on + strand at 813.751 kb on + strand at 813.755 kb on + strand at 813.755 kb on + strand at 814.354 kb on + strand at 814.355 kb on - strand at 814.493 kb on - strand at 814.505 kb on - strand at 814.508 kb on + strand at 814.508 kb on + strand at 814.508 kb on + strand at 814.508 kb on + strand at 814.509 kb on - strand at 814.510 kb on + strand at 814.511 kb on - strand at 814.617 kb on + strand at 814.741 kb on + strand at 814.741 kb on + strand at 814.741 kb on + strand at 814.741 kb on + strand at 814.741 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO2 MOI 1 remove 812,818 - -1.5 813,165 + BPHYT_RS03580 0.79 -1.2 813,165 + BPHYT_RS03580 0.79 -2.1 813,166 - BPHYT_RS03580 0.80 -0.1 813,166 - BPHYT_RS03580 0.80 -0.0 813,384 + +0.1 813,409 - +1.0 813,439 + +0.0 813,439 + -1.3 813,440 - -1.0 813,442 - +0.3 813,442 - -1.3 813,492 - +0.1 813,492 - -0.1 813,492 - -1.4 813,492 - +0.1 813,492 - -1.0 813,492 - -0.2 813,492 - -0.1 813,502 + -1.2 813,502 + -1.0 813,502 + +0.8 813,503 - -1.6 813,503 - +0.3 813,503 - -3.1 813,550 - +0.1 813,558 + +0.6 813,559 - -1.0 813,751 + +0.0 813,751 + -1.2 813,755 + -0.7 813,755 + -1.1 814,354 + -0.9 814,355 - -0.8 814,493 - +1.4 814,505 - +0.5 814,508 + -0.9 814,508 + +1.5 814,508 + +0.3 814,508 + +0.6 814,509 - -0.4 814,510 + -0.4 814,511 - -2.8 814,617 + -0.6 814,741 + +2.0 814,741 + -0.5 814,741 + +1.4 814,741 + -0.6 814,741 + -0.8
Or see this region's nucleotide sequence