Experiment: 24hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03215 and BPHYT_RS03220 are separated by 98 nucleotides BPHYT_RS03220 and BPHYT_RS03225 are separated by 128 nucleotides
BPHYT_RS03215: BPHYT_RS03215 - TetR family transcriptional regulator, at 720,855 to 721,454
_RS03215
BPHYT_RS03220: BPHYT_RS03220 - Acyl-CoA dehydrogenase (EC 1.3.8.7) <small>(from data)</small>, at 721,553 to 723,340
_RS03220
BPHYT_RS03225: BPHYT_RS03225 - 3-hydroxyacyl-CoA dehydrogenase, at 723,469 to 725,904
_RS03225
Position (kb) 721
722
723
724 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 720.656 kb on + strand at 720.770 kb on - strand at 720.770 kb on - strand at 720.838 kb on + strand at 720.838 kb on + strand at 721.164 kb on + strand, within BPHYT_RS03215 at 721.185 kb on + strand, within BPHYT_RS03215 at 721.186 kb on - strand, within BPHYT_RS03215 at 721.435 kb on - strand at 721.516 kb on + strand at 721.562 kb on + strand at 721.609 kb on + strand at 721.710 kb on + strand at 721.711 kb on - strand at 721.811 kb on + strand, within BPHYT_RS03220 at 721.811 kb on + strand, within BPHYT_RS03220 at 721.812 kb on - strand, within BPHYT_RS03220 at 721.812 kb on - strand, within BPHYT_RS03220 at 721.934 kb on + strand, within BPHYT_RS03220 at 721.935 kb on - strand, within BPHYT_RS03220 at 721.958 kb on + strand, within BPHYT_RS03220 at 722.003 kb on + strand, within BPHYT_RS03220 at 722.486 kb on + strand, within BPHYT_RS03220 at 722.609 kb on - strand, within BPHYT_RS03220 at 722.801 kb on + strand, within BPHYT_RS03220 at 722.801 kb on + strand, within BPHYT_RS03220 at 722.843 kb on + strand, within BPHYT_RS03220 at 722.843 kb on + strand, within BPHYT_RS03220 at 722.843 kb on + strand, within BPHYT_RS03220 at 722.843 kb on + strand, within BPHYT_RS03220 at 722.844 kb on - strand, within BPHYT_RS03220 at 722.873 kb on + strand, within BPHYT_RS03220 at 722.873 kb on + strand, within BPHYT_RS03220 at 723.190 kb on + strand at 723.215 kb on + strand at 723.450 kb on - strand at 723.494 kb on + strand at 723.925 kb on + strand, within BPHYT_RS03225 at 723.926 kb on - strand, within BPHYT_RS03225
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO2 MOI 1 remove 720,656 + +0.2 720,770 - -0.2 720,770 - -0.8 720,838 + -1.3 720,838 + -0.2 721,164 + BPHYT_RS03215 0.52 -0.5 721,185 + BPHYT_RS03215 0.55 -0.6 721,186 - BPHYT_RS03215 0.55 -0.9 721,435 - -0.3 721,516 + -1.7 721,562 + -0.4 721,609 + -0.8 721,710 + +0.2 721,711 - -2.6 721,811 + BPHYT_RS03220 0.14 +0.1 721,811 + BPHYT_RS03220 0.14 +0.5 721,812 - BPHYT_RS03220 0.14 -1.5 721,812 - BPHYT_RS03220 0.14 -1.0 721,934 + BPHYT_RS03220 0.21 +0.9 721,935 - BPHYT_RS03220 0.21 +1.3 721,958 + BPHYT_RS03220 0.23 +1.6 722,003 + BPHYT_RS03220 0.25 -1.5 722,486 + BPHYT_RS03220 0.52 +0.2 722,609 - BPHYT_RS03220 0.59 +0.7 722,801 + BPHYT_RS03220 0.70 -0.5 722,801 + BPHYT_RS03220 0.70 +3.6 722,843 + BPHYT_RS03220 0.72 -0.3 722,843 + BPHYT_RS03220 0.72 -0.0 722,843 + BPHYT_RS03220 0.72 -0.3 722,843 + BPHYT_RS03220 0.72 +2.3 722,844 - BPHYT_RS03220 0.72 -1.8 722,873 + BPHYT_RS03220 0.74 -1.0 722,873 + BPHYT_RS03220 0.74 -0.3 723,190 + -1.2 723,215 + -2.1 723,450 - -1.0 723,494 + +0.3 723,925 + BPHYT_RS03225 0.19 -0.0 723,926 - BPHYT_RS03225 0.19 -0.4
Or see this region's nucleotide sequence