Experiment: 24hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03065 and BPHYT_RS03070 are separated by 152 nucleotides BPHYT_RS03070 and BPHYT_RS03075 are separated by 104 nucleotides
BPHYT_RS03065: BPHYT_RS03065 - LuxR family transcriptional regulator, at 683,897 to 684,535
_RS03065
BPHYT_RS03070: BPHYT_RS03070 - LuxR family transcriptional regulator, at 684,688 to 685,392
_RS03070
BPHYT_RS03075: BPHYT_RS03075 - LuxR family transcriptional regulator, at 685,497 to 686,141
_RS03075
Position (kb) 684
685
686 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 684.270 kb on - strand, within BPHYT_RS03065 at 684.503 kb on + strand at 684.613 kb on - strand at 684.708 kb on - strand at 684.880 kb on + strand, within BPHYT_RS03070 at 684.881 kb on - strand at 684.881 kb on - strand, within BPHYT_RS03070 at 684.881 kb on - strand, within BPHYT_RS03070 at 685.093 kb on + strand, within BPHYT_RS03070 at 685.093 kb on + strand, within BPHYT_RS03070 at 685.093 kb on + strand, within BPHYT_RS03070 at 685.093 kb on + strand, within BPHYT_RS03070 at 685.093 kb on + strand, within BPHYT_RS03070 at 685.093 kb on + strand, within BPHYT_RS03070 at 685.093 kb on + strand, within BPHYT_RS03070 at 685.154 kb on - strand, within BPHYT_RS03070 at 685.201 kb on + strand, within BPHYT_RS03070 at 685.202 kb on - strand, within BPHYT_RS03070 at 685.391 kb on - strand at 685.803 kb on - strand, within BPHYT_RS03075 at 685.887 kb on + strand, within BPHYT_RS03075 at 685.887 kb on + strand, within BPHYT_RS03075 at 685.888 kb on - strand, within BPHYT_RS03075 at 685.990 kb on - strand, within BPHYT_RS03075 at 686.054 kb on + strand, within BPHYT_RS03075 at 686.152 kb on + strand at 686.166 kb on - strand at 686.166 kb on - strand at 686.250 kb on - strand at 686.336 kb on + strand at 686.336 kb on + strand at 686.357 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO2 MOI 1 remove 684,270 - BPHYT_RS03065 0.58 -1.6 684,503 + -1.7 684,613 - +0.3 684,708 - -2.0 684,880 + BPHYT_RS03070 0.27 +0.2 684,881 - +0.3 684,881 - BPHYT_RS03070 0.27 -0.3 684,881 - BPHYT_RS03070 0.27 -0.5 685,093 + BPHYT_RS03070 0.57 -0.6 685,093 + BPHYT_RS03070 0.57 +0.8 685,093 + BPHYT_RS03070 0.57 +0.2 685,093 + BPHYT_RS03070 0.57 +1.3 685,093 + BPHYT_RS03070 0.57 +0.7 685,093 + BPHYT_RS03070 0.57 +0.1 685,093 + BPHYT_RS03070 0.57 -0.6 685,154 - BPHYT_RS03070 0.66 -0.4 685,201 + BPHYT_RS03070 0.73 +0.7 685,202 - BPHYT_RS03070 0.73 -0.3 685,391 - -0.7 685,803 - BPHYT_RS03075 0.47 -1.0 685,887 + BPHYT_RS03075 0.60 -0.1 685,887 + BPHYT_RS03075 0.60 -0.7 685,888 - BPHYT_RS03075 0.61 -2.8 685,990 - BPHYT_RS03075 0.76 -0.4 686,054 + BPHYT_RS03075 0.86 -0.6 686,152 + -2.2 686,166 - +1.5 686,166 - +0.4 686,250 - +0.6 686,336 + +3.1 686,336 + -0.3 686,357 - +0.1
Or see this region's nucleotide sequence