Experiment: 24hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03005 and BPHYT_RS03010 are separated by 39 nucleotides BPHYT_RS03010 and BPHYT_RS03015 are separated by 34 nucleotides BPHYT_RS03015 and BPHYT_RS03020 are separated by 14 nucleotides
BPHYT_RS03005: BPHYT_RS03005 - CoA transferase, at 669,764 to 670,954
_RS03005
BPHYT_RS03010: BPHYT_RS03010 - GntR family transcriptional regulator, at 670,994 to 671,752
_RS03010
BPHYT_RS03015: BPHYT_RS03015 - aldolase, at 671,787 to 672,599
_RS03015
BPHYT_RS03020: BPHYT_RS03020 - hypothetical protein, at 672,614 to 673,414
_RS03020
Position (kb) 670
671
672 Strain fitness (log2 ratio) -2
-1
0
1 at 670.095 kb on - strand, within BPHYT_RS03005 at 670.095 kb on - strand, within BPHYT_RS03005 at 670.148 kb on + strand, within BPHYT_RS03005 at 670.190 kb on + strand, within BPHYT_RS03005 at 670.191 kb on - strand, within BPHYT_RS03005 at 670.387 kb on + strand, within BPHYT_RS03005 at 670.388 kb on - strand, within BPHYT_RS03005 at 670.398 kb on - strand, within BPHYT_RS03005 at 670.413 kb on - strand, within BPHYT_RS03005 at 670.484 kb on + strand, within BPHYT_RS03005 at 670.484 kb on + strand, within BPHYT_RS03005 at 670.484 kb on + strand, within BPHYT_RS03005 at 670.953 kb on - strand at 671.033 kb on + strand at 671.033 kb on + strand at 671.285 kb on + strand, within BPHYT_RS03010 at 671.287 kb on + strand, within BPHYT_RS03010 at 671.287 kb on + strand, within BPHYT_RS03010 at 671.450 kb on + strand, within BPHYT_RS03010 at 671.450 kb on + strand, within BPHYT_RS03010 at 671.450 kb on + strand, within BPHYT_RS03010 at 671.450 kb on + strand, within BPHYT_RS03010 at 671.451 kb on - strand, within BPHYT_RS03010 at 671.451 kb on - strand, within BPHYT_RS03010 at 671.451 kb on - strand, within BPHYT_RS03010 at 671.451 kb on - strand, within BPHYT_RS03010 at 671.452 kb on + strand, within BPHYT_RS03010 at 671.452 kb on + strand, within BPHYT_RS03010 at 671.510 kb on + strand, within BPHYT_RS03010 at 671.714 kb on + strand at 671.714 kb on + strand at 671.715 kb on - strand at 671.715 kb on - strand at 671.802 kb on + strand at 671.803 kb on - strand at 672.291 kb on + strand, within BPHYT_RS03015 at 672.602 kb on + strand at 672.602 kb on + strand at 672.705 kb on + strand, within BPHYT_RS03020 at 672.705 kb on + strand, within BPHYT_RS03020 at 672.705 kb on + strand, within BPHYT_RS03020 at 672.706 kb on - strand, within BPHYT_RS03020 at 672.706 kb on - strand, within BPHYT_RS03020
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO2 MOI 1 remove 670,095 - BPHYT_RS03005 0.28 -0.3 670,095 - BPHYT_RS03005 0.28 -0.1 670,148 + BPHYT_RS03005 0.32 -0.3 670,190 + BPHYT_RS03005 0.36 -0.3 670,191 - BPHYT_RS03005 0.36 +1.5 670,387 + BPHYT_RS03005 0.52 -0.1 670,388 - BPHYT_RS03005 0.52 -0.6 670,398 - BPHYT_RS03005 0.53 -1.0 670,413 - BPHYT_RS03005 0.54 +0.4 670,484 + BPHYT_RS03005 0.60 -0.2 670,484 + BPHYT_RS03005 0.60 -0.8 670,484 + BPHYT_RS03005 0.60 +0.7 670,953 - -0.6 671,033 + +0.2 671,033 + -0.3 671,285 + BPHYT_RS03010 0.38 -0.1 671,287 + BPHYT_RS03010 0.39 -0.5 671,287 + BPHYT_RS03010 0.39 -0.0 671,450 + BPHYT_RS03010 0.60 +0.9 671,450 + BPHYT_RS03010 0.60 +1.3 671,450 + BPHYT_RS03010 0.60 -0.7 671,450 + BPHYT_RS03010 0.60 +0.6 671,451 - BPHYT_RS03010 0.60 -0.9 671,451 - BPHYT_RS03010 0.60 -0.9 671,451 - BPHYT_RS03010 0.60 +1.3 671,451 - BPHYT_RS03010 0.60 -2.7 671,452 + BPHYT_RS03010 0.60 +0.7 671,452 + BPHYT_RS03010 0.60 +1.7 671,510 + BPHYT_RS03010 0.68 +0.3 671,714 + -1.5 671,714 + -1.3 671,715 - -0.4 671,715 - -0.5 671,802 + -0.3 671,803 - -1.5 672,291 + BPHYT_RS03015 0.62 +0.6 672,602 + -1.4 672,602 + -0.4 672,705 + BPHYT_RS03020 0.11 +0.3 672,705 + BPHYT_RS03020 0.11 +0.4 672,705 + BPHYT_RS03020 0.11 +0.7 672,706 - BPHYT_RS03020 0.11 -0.1 672,706 - BPHYT_RS03020 0.11 -1.2
Or see this region's nucleotide sequence