Experiment: 24hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02990 and BPHYT_RS02995 are separated by 5 nucleotides BPHYT_RS02995 and BPHYT_RS03000 are separated by 10 nucleotides
BPHYT_RS02990: BPHYT_RS02990 - MFS transporter, at 665,790 to 667,175
_RS02990
BPHYT_RS02995: BPHYT_RS02995 - 2-methylcitrate dehydratase, at 667,181 to 668,593
_RS02995
BPHYT_RS03000: BPHYT_RS03000 - acyl-CoA dehydrogenase, at 668,604 to 669,767
_RS03000
Position (kb) 667
668
669 Strain fitness (log2 ratio) -2
-1
0
1 at 666.322 kb on - strand, within BPHYT_RS02990 at 666.323 kb on + strand, within BPHYT_RS02990 at 666.324 kb on - strand, within BPHYT_RS02990 at 666.324 kb on - strand, within BPHYT_RS02990 at 666.378 kb on - strand, within BPHYT_RS02990 at 666.599 kb on + strand, within BPHYT_RS02990 at 666.599 kb on + strand, within BPHYT_RS02990 at 666.600 kb on - strand, within BPHYT_RS02990 at 666.804 kb on + strand, within BPHYT_RS02990 at 666.868 kb on - strand, within BPHYT_RS02990 at 666.897 kb on + strand, within BPHYT_RS02990 at 666.898 kb on - strand, within BPHYT_RS02990 at 666.955 kb on + strand, within BPHYT_RS02990 at 666.955 kb on + strand, within BPHYT_RS02990 at 668.210 kb on + strand, within BPHYT_RS02995 at 668.211 kb on - strand, within BPHYT_RS02995 at 668.211 kb on - strand, within BPHYT_RS02995 at 668.352 kb on - strand, within BPHYT_RS02995 at 668.468 kb on + strand at 668.526 kb on + strand at 668.527 kb on - strand at 668.591 kb on + strand at 668.592 kb on - strand at 668.717 kb on + strand at 668.817 kb on + strand, within BPHYT_RS03000 at 668.817 kb on + strand, within BPHYT_RS03000 at 668.933 kb on + strand, within BPHYT_RS03000 at 668.934 kb on - strand, within BPHYT_RS03000 at 668.937 kb on + strand, within BPHYT_RS03000 at 668.938 kb on - strand, within BPHYT_RS03000 at 669.052 kb on - strand, within BPHYT_RS03000 at 669.224 kb on + strand, within BPHYT_RS03000 at 669.225 kb on - strand, within BPHYT_RS03000 at 669.319 kb on + strand, within BPHYT_RS03000 at 669.406 kb on - strand, within BPHYT_RS03000 at 669.406 kb on - strand, within BPHYT_RS03000 at 669.406 kb on - strand, within BPHYT_RS03000 at 669.532 kb on - strand, within BPHYT_RS03000 at 669.532 kb on - strand, within BPHYT_RS03000
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO2 MOI 1 remove 666,322 - BPHYT_RS02990 0.38 -1.3 666,323 + BPHYT_RS02990 0.38 -0.3 666,324 - BPHYT_RS02990 0.39 +1.3 666,324 - BPHYT_RS02990 0.39 -1.7 666,378 - BPHYT_RS02990 0.42 -2.0 666,599 + BPHYT_RS02990 0.58 +0.0 666,599 + BPHYT_RS02990 0.58 -0.1 666,600 - BPHYT_RS02990 0.58 -2.6 666,804 + BPHYT_RS02990 0.73 +0.7 666,868 - BPHYT_RS02990 0.78 -1.4 666,897 + BPHYT_RS02990 0.80 -1.0 666,898 - BPHYT_RS02990 0.80 -0.0 666,955 + BPHYT_RS02990 0.84 +0.4 666,955 + BPHYT_RS02990 0.84 +0.1 668,210 + BPHYT_RS02995 0.73 +0.1 668,211 - BPHYT_RS02995 0.73 -1.8 668,211 - BPHYT_RS02995 0.73 -0.8 668,352 - BPHYT_RS02995 0.83 +0.1 668,468 + -0.6 668,526 + -0.3 668,527 - -0.3 668,591 + +0.3 668,592 - +0.3 668,717 + +1.1 668,817 + BPHYT_RS03000 0.18 -0.1 668,817 + BPHYT_RS03000 0.18 -0.9 668,933 + BPHYT_RS03000 0.28 +0.3 668,934 - BPHYT_RS03000 0.28 -0.7 668,937 + BPHYT_RS03000 0.29 -0.6 668,938 - BPHYT_RS03000 0.29 -2.0 669,052 - BPHYT_RS03000 0.38 -0.4 669,224 + BPHYT_RS03000 0.53 -1.8 669,225 - BPHYT_RS03000 0.53 -1.1 669,319 + BPHYT_RS03000 0.61 -0.3 669,406 - BPHYT_RS03000 0.69 -0.8 669,406 - BPHYT_RS03000 0.69 +0.0 669,406 - BPHYT_RS03000 0.69 -0.4 669,532 - BPHYT_RS03000 0.80 +1.7 669,532 - BPHYT_RS03000 0.80 -0.1
Or see this region's nucleotide sequence