Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02445

Experiment: 24hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS02435 and BPHYT_RS02440 are separated by 198 nucleotidesBPHYT_RS02440 and BPHYT_RS02445 are separated by 13 nucleotidesBPHYT_RS02445 and BPHYT_RS02450 are separated by 311 nucleotides BPHYT_RS02435: BPHYT_RS02435 - hypothetical protein, at 553,671 to 553,997 _RS02435 BPHYT_RS02440: BPHYT_RS02440 - octanoyltransferase, at 554,196 to 554,921 _RS02440 BPHYT_RS02445: BPHYT_RS02445 - lipoyl synthase, at 554,935 to 555,942 _RS02445 BPHYT_RS02450: BPHYT_RS02450 - hypothetical protein, at 556,254 to 556,700 _RS02450 Position (kb) 554 555 556Strain fitness (log2 ratio) -1 0 1 2 3at 553.971 kb on - strandat 553.971 kb on - strandat 553.971 kb on - strandat 555.949 kb on + strandat 555.956 kb on + strandat 555.957 kb on - strandat 556.070 kb on + strandat 556.073 kb on + strandat 556.677 kb on - strandat 556.677 kb on - strandat 556.701 kb on - strandat 556.901 kb on + strandat 556.931 kb on - strandat 556.931 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO2 MOI 1
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553,971 - +0.0
553,971 - -0.4
553,971 - +0.1
555,949 + -0.7
555,956 + -1.7
555,957 - +0.3
556,070 + -0.1
556,073 + +0.2
556,677 - -0.0
556,677 - -0.7
556,701 - -0.5
556,901 + -0.3
556,931 - +0.0
556,931 - +3.3

Or see this region's nucleotide sequence