Experiment: 24hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01865 and BPHYT_RS01870 are separated by 108 nucleotides BPHYT_RS01870 and BPHYT_RS01875 are separated by 284 nucleotides
BPHYT_RS01865: BPHYT_RS01865 - major facilitator transporter, at 423,297 to 424,589
_RS01865
BPHYT_RS01870: BPHYT_RS01870 - 6-aminohexanoate-cyclic-dimer hydrolase, at 424,698 to 426,218
_RS01870
BPHYT_RS01875: BPHYT_RS01875 - carboxymethylenebutenolidase, at 426,503 to 427,201
_RS01875
Position (kb) 424
425
426
427 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 423.900 kb on + strand, within BPHYT_RS01865 at 423.901 kb on - strand, within BPHYT_RS01865 at 424.047 kb on + strand, within BPHYT_RS01865 at 424.047 kb on + strand, within BPHYT_RS01865 at 424.048 kb on - strand, within BPHYT_RS01865 at 424.063 kb on - strand, within BPHYT_RS01865 at 424.063 kb on - strand, within BPHYT_RS01865 at 424.101 kb on + strand, within BPHYT_RS01865 at 424.223 kb on + strand, within BPHYT_RS01865 at 424.224 kb on - strand, within BPHYT_RS01865 at 424.239 kb on + strand, within BPHYT_RS01865 at 424.240 kb on - strand, within BPHYT_RS01865 at 424.314 kb on - strand, within BPHYT_RS01865 at 424.327 kb on - strand, within BPHYT_RS01865 at 424.329 kb on + strand, within BPHYT_RS01865 at 424.401 kb on + strand, within BPHYT_RS01865 at 424.402 kb on - strand, within BPHYT_RS01865 at 424.491 kb on + strand at 424.492 kb on - strand at 424.492 kb on - strand at 424.495 kb on - strand at 424.699 kb on + strand at 424.700 kb on - strand at 424.700 kb on - strand at 424.844 kb on - strand at 425.321 kb on + strand, within BPHYT_RS01870 at 425.321 kb on + strand, within BPHYT_RS01870 at 425.322 kb on - strand, within BPHYT_RS01870 at 425.322 kb on - strand, within BPHYT_RS01870 at 425.413 kb on + strand, within BPHYT_RS01870 at 425.420 kb on + strand, within BPHYT_RS01870 at 425.694 kb on - strand, within BPHYT_RS01870 at 425.792 kb on + strand, within BPHYT_RS01870 at 425.792 kb on + strand, within BPHYT_RS01870 at 425.793 kb on - strand, within BPHYT_RS01870 at 425.794 kb on + strand, within BPHYT_RS01870 at 425.794 kb on + strand, within BPHYT_RS01870 at 425.795 kb on - strand, within BPHYT_RS01870 at 426.070 kb on + strand at 426.168 kb on + strand at 426.169 kb on - strand at 426.361 kb on + strand at 426.370 kb on + strand at 426.370 kb on + strand at 426.371 kb on - strand at 426.504 kb on + strand at 426.567 kb on + strand at 426.567 kb on + strand at 426.568 kb on - strand at 426.612 kb on + strand, within BPHYT_RS01875 at 426.613 kb on - strand, within BPHYT_RS01875 at 426.772 kb on - strand, within BPHYT_RS01875 at 426.772 kb on - strand, within BPHYT_RS01875 at 426.813 kb on + strand, within BPHYT_RS01875 at 426.813 kb on + strand, within BPHYT_RS01875 at 426.975 kb on + strand, within BPHYT_RS01875 at 426.975 kb on + strand, within BPHYT_RS01875 at 427.070 kb on - strand, within BPHYT_RS01875 at 427.144 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO2 MOI 1 remove 423,900 + BPHYT_RS01865 0.47 +1.0 423,901 - BPHYT_RS01865 0.47 -1.0 424,047 + BPHYT_RS01865 0.58 -0.4 424,047 + BPHYT_RS01865 0.58 +0.2 424,048 - BPHYT_RS01865 0.58 +0.1 424,063 - BPHYT_RS01865 0.59 +2.2 424,063 - BPHYT_RS01865 0.59 +0.4 424,101 + BPHYT_RS01865 0.62 +1.0 424,223 + BPHYT_RS01865 0.72 +0.2 424,224 - BPHYT_RS01865 0.72 -0.1 424,239 + BPHYT_RS01865 0.73 -1.1 424,240 - BPHYT_RS01865 0.73 -0.1 424,314 - BPHYT_RS01865 0.79 +0.4 424,327 - BPHYT_RS01865 0.80 -0.5 424,329 + BPHYT_RS01865 0.80 -0.5 424,401 + BPHYT_RS01865 0.85 -2.5 424,402 - BPHYT_RS01865 0.85 -1.2 424,491 + -0.8 424,492 - -0.9 424,492 - +0.1 424,495 - -0.3 424,699 + +0.1 424,700 - -0.7 424,700 - -0.3 424,844 - -0.1 425,321 + BPHYT_RS01870 0.41 -3.4 425,321 + BPHYT_RS01870 0.41 -0.6 425,322 - BPHYT_RS01870 0.41 -1.0 425,322 - BPHYT_RS01870 0.41 -0.4 425,413 + BPHYT_RS01870 0.47 +1.5 425,420 + BPHYT_RS01870 0.47 +0.0 425,694 - BPHYT_RS01870 0.65 -0.9 425,792 + BPHYT_RS01870 0.72 +0.3 425,792 + BPHYT_RS01870 0.72 -1.1 425,793 - BPHYT_RS01870 0.72 -0.1 425,794 + BPHYT_RS01870 0.72 +0.1 425,794 + BPHYT_RS01870 0.72 +0.0 425,795 - BPHYT_RS01870 0.72 -1.1 426,070 + +1.0 426,168 + +0.0 426,169 - -1.2 426,361 + -0.7 426,370 + -1.9 426,370 + +0.8 426,371 - -0.6 426,504 + +0.5 426,567 + +1.1 426,567 + -0.2 426,568 - -0.7 426,612 + BPHYT_RS01875 0.16 -0.3 426,613 - BPHYT_RS01875 0.16 -2.3 426,772 - BPHYT_RS01875 0.38 +0.1 426,772 - BPHYT_RS01875 0.38 -1.4 426,813 + BPHYT_RS01875 0.44 -0.4 426,813 + BPHYT_RS01875 0.44 +0.3 426,975 + BPHYT_RS01875 0.68 +0.6 426,975 + BPHYT_RS01875 0.68 -1.1 427,070 - BPHYT_RS01875 0.81 -2.9 427,144 - +0.4
Or see this region's nucleotide sequence