Experiment: 24hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01365 and BPHYT_RS01370 are separated by 176 nucleotides
BPHYT_RS01365: BPHYT_RS01365 - cobalamin biosynthesis protein CobW, at 312,566 to 313,552
_RS01365
BPHYT_RS01370: BPHYT_RS01370 - cation ABC transporter substrate-binding protein, at 313,729 to 314,643
_RS01370
Position (kb) 312
313
314 Strain fitness (log2 ratio) -2
-1
0
1 at 311.566 kb on + strand at 311.566 kb on + strand at 311.566 kb on + strand at 311.566 kb on + strand at 311.566 kb on + strand at 311.567 kb on - strand at 311.589 kb on + strand at 311.589 kb on + strand at 311.600 kb on + strand at 311.600 kb on + strand at 311.600 kb on + strand at 311.600 kb on + strand at 311.601 kb on - strand at 311.850 kb on - strand at 311.850 kb on - strand at 311.850 kb on - strand at 311.850 kb on - strand at 311.947 kb on + strand at 311.947 kb on + strand at 311.947 kb on + strand at 311.947 kb on + strand at 311.947 kb on + strand at 311.947 kb on + strand at 311.948 kb on - strand at 311.948 kb on - strand at 311.948 kb on - strand at 311.948 kb on - strand at 311.961 kb on + strand at 312.014 kb on + strand at 312.109 kb on - strand at 312.109 kb on - strand at 312.109 kb on - strand at 312.111 kb on + strand at 312.133 kb on + strand at 312.134 kb on - strand at 312.136 kb on + strand at 312.142 kb on + strand at 312.143 kb on - strand at 312.143 kb on - strand at 312.143 kb on - strand at 312.148 kb on + strand at 312.148 kb on + strand at 312.148 kb on + strand at 312.148 kb on + strand at 312.148 kb on + strand at 312.148 kb on + strand at 312.148 kb on + strand at 312.148 kb on + strand at 312.148 kb on + strand at 312.148 kb on + strand at 312.149 kb on - strand at 312.149 kb on - strand at 312.149 kb on - strand at 312.149 kb on - strand at 312.149 kb on - strand at 312.149 kb on - strand at 312.149 kb on - strand at 312.149 kb on - strand at 312.151 kb on - strand at 312.180 kb on + strand at 312.180 kb on + strand at 312.181 kb on - strand at 312.238 kb on + strand at 312.239 kb on - strand at 312.239 kb on - strand at 312.436 kb on + strand at 312.436 kb on + strand at 312.437 kb on - strand at 312.481 kb on - strand at 312.567 kb on + strand at 312.567 kb on + strand at 312.567 kb on + strand at 312.568 kb on - strand at 312.751 kb on - strand, within BPHYT_RS01365 at 312.751 kb on - strand, within BPHYT_RS01365 at 312.751 kb on - strand, within BPHYT_RS01365 at 312.767 kb on - strand, within BPHYT_RS01365 at 312.771 kb on + strand, within BPHYT_RS01365 at 312.771 kb on + strand, within BPHYT_RS01365 at 312.771 kb on + strand, within BPHYT_RS01365 at 312.771 kb on + strand, within BPHYT_RS01365 at 312.772 kb on - strand, within BPHYT_RS01365 at 312.772 kb on - strand, within BPHYT_RS01365 at 312.772 kb on - strand, within BPHYT_RS01365 at 313.069 kb on + strand, within BPHYT_RS01365 at 313.170 kb on + strand, within BPHYT_RS01365 at 313.170 kb on + strand, within BPHYT_RS01365 at 313.459 kb on + strand at 313.460 kb on - strand at 313.555 kb on + strand at 313.556 kb on - strand at 313.577 kb on + strand at 313.683 kb on + strand at 313.766 kb on + strand at 313.767 kb on - strand at 313.838 kb on - strand, within BPHYT_RS01370 at 313.870 kb on + strand, within BPHYT_RS01370 at 313.870 kb on + strand, within BPHYT_RS01370 at 313.871 kb on - strand, within BPHYT_RS01370 at 313.871 kb on - strand, within BPHYT_RS01370 at 313.871 kb on - strand, within BPHYT_RS01370 at 313.918 kb on - strand, within BPHYT_RS01370 at 313.918 kb on - strand, within BPHYT_RS01370 at 313.918 kb on - strand, within BPHYT_RS01370 at 313.940 kb on + strand, within BPHYT_RS01370 at 314.183 kb on - strand, within BPHYT_RS01370 at 314.303 kb on - strand, within BPHYT_RS01370 at 314.303 kb on - strand, within BPHYT_RS01370 at 314.303 kb on - strand, within BPHYT_RS01370 at 314.303 kb on - strand, within BPHYT_RS01370 at 314.341 kb on + strand, within BPHYT_RS01370 at 314.341 kb on + strand, within BPHYT_RS01370 at 314.341 kb on + strand, within BPHYT_RS01370 at 314.443 kb on + strand, within BPHYT_RS01370 at 314.444 kb on - strand, within BPHYT_RS01370 at 314.525 kb on - strand, within BPHYT_RS01370
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO2 MOI 1 remove 311,566 + +0.2 311,566 + +1.3 311,566 + +0.0 311,566 + +0.7 311,566 + -1.4 311,567 - +0.3 311,589 + +0.1 311,589 + -0.5 311,600 + -1.2 311,600 + -0.0 311,600 + -0.9 311,600 + -0.8 311,601 - +0.1 311,850 - -0.2 311,850 - +0.2 311,850 - +0.3 311,850 - +1.2 311,947 + +0.0 311,947 + -0.9 311,947 + +0.1 311,947 + +1.0 311,947 + -0.0 311,947 + +0.3 311,948 - -1.5 311,948 - -0.7 311,948 - +0.1 311,948 - -0.2 311,961 + -2.2 312,014 + -1.0 312,109 - -0.8 312,109 - +0.3 312,109 - +0.0 312,111 + -0.2 312,133 + +0.3 312,134 - -0.1 312,136 + +0.6 312,142 + +0.1 312,143 - -0.2 312,143 - +0.0 312,143 - +0.0 312,148 + -0.4 312,148 + +0.5 312,148 + +0.0 312,148 + -0.6 312,148 + +0.9 312,148 + +0.4 312,148 + -0.8 312,148 + -0.9 312,148 + +1.3 312,148 + +0.5 312,149 - +0.3 312,149 - -0.3 312,149 - -1.0 312,149 - -1.3 312,149 - -0.0 312,149 - +0.5 312,149 - -0.1 312,149 - -0.5 312,151 - +0.4 312,180 + -0.1 312,180 + +0.1 312,181 - +0.2 312,238 + +0.2 312,239 - +0.4 312,239 - -0.5 312,436 + -0.1 312,436 + -0.8 312,437 - -0.7 312,481 - -2.2 312,567 + -0.3 312,567 + +1.3 312,567 + -0.3 312,568 - -1.6 312,751 - BPHYT_RS01365 0.19 +0.6 312,751 - BPHYT_RS01365 0.19 +1.2 312,751 - BPHYT_RS01365 0.19 -0.5 312,767 - BPHYT_RS01365 0.20 -0.5 312,771 + BPHYT_RS01365 0.21 +0.8 312,771 + BPHYT_RS01365 0.21 +0.8 312,771 + BPHYT_RS01365 0.21 +0.9 312,771 + BPHYT_RS01365 0.21 +0.4 312,772 - BPHYT_RS01365 0.21 -0.9 312,772 - BPHYT_RS01365 0.21 -0.2 312,772 - BPHYT_RS01365 0.21 +0.5 313,069 + BPHYT_RS01365 0.51 -0.9 313,170 + BPHYT_RS01365 0.61 +0.6 313,170 + BPHYT_RS01365 0.61 -0.0 313,459 + +0.1 313,460 - +0.6 313,555 + +0.2 313,556 - +0.0 313,577 + -1.8 313,683 + -0.2 313,766 + -1.5 313,767 - +0.3 313,838 - BPHYT_RS01370 0.12 +1.4 313,870 + BPHYT_RS01370 0.15 -1.1 313,870 + BPHYT_RS01370 0.15 -0.4 313,871 - BPHYT_RS01370 0.16 +0.2 313,871 - BPHYT_RS01370 0.16 -0.2 313,871 - BPHYT_RS01370 0.16 -0.2 313,918 - BPHYT_RS01370 0.21 +0.2 313,918 - BPHYT_RS01370 0.21 -1.2 313,918 - BPHYT_RS01370 0.21 -0.5 313,940 + BPHYT_RS01370 0.23 -0.1 314,183 - BPHYT_RS01370 0.50 +0.3 314,303 - BPHYT_RS01370 0.63 -0.5 314,303 - BPHYT_RS01370 0.63 +0.2 314,303 - BPHYT_RS01370 0.63 +0.1 314,303 - BPHYT_RS01370 0.63 -0.3 314,341 + BPHYT_RS01370 0.67 +0.0 314,341 + BPHYT_RS01370 0.67 +0.8 314,341 + BPHYT_RS01370 0.67 -0.9 314,443 + BPHYT_RS01370 0.78 +0.2 314,444 - BPHYT_RS01370 0.78 +1.0 314,525 - BPHYT_RS01370 0.87 -1.1
Or see this region's nucleotide sequence