Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00490

Experiment: 24hr PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO2 MOI 1
118,430	+		BPHYT_RS00485	0.29	+0.7
118,431	-		BPHYT_RS00485	0.29	+0.3
118,565	+		BPHYT_RS00485	0.39	-0.7
118,626	-		BPHYT_RS00485	0.44	+0.9
118,626	-		BPHYT_RS00485	0.44	-2.1
118,626	-		BPHYT_RS00485	0.44	-0.1
118,887	+		BPHYT_RS00485	0.64	-1.0
118,889	+		BPHYT_RS00485	0.64	-0.3
118,889	+		BPHYT_RS00485	0.64	+0.6
118,890	-		BPHYT_RS00485	0.64	+0.8
118,890	-		BPHYT_RS00485	0.64	-1.1
118,948	-		BPHYT_RS00485	0.68	-0.4
119,570	+		BPHYT_RS00490	0.12	+0.1
119,571	-		BPHYT_RS00490	0.12	+0.2
119,571	-		BPHYT_RS00490	0.12	-0.7
119,571	-		BPHYT_RS00490	0.12	-0.2
119,574	+		BPHYT_RS00490	0.12	+0.1
119,575	-		BPHYT_RS00490	0.12	-0.7
119,575	-		BPHYT_RS00490	0.12	+0.6
119,684	+		BPHYT_RS00490	0.21	+0.2
119,899	-		BPHYT_RS00490	0.37	+2.3
119,982	-		BPHYT_RS00490	0.43	-2.0
119,983	+		BPHYT_RS00490	0.43	-0.4
119,984	-		BPHYT_RS00490	0.43	+0.3
120,025	+		BPHYT_RS00490	0.47	+0.7
120,063	+		BPHYT_RS00490	0.49	-0.5
120,064	-		BPHYT_RS00490	0.50	-1.0
120,064	-		BPHYT_RS00490	0.50	-0.3
120,064	-		BPHYT_RS00490	0.50	+0.3
120,065	+		BPHYT_RS00490	0.50	-0.5
120,383	+		BPHYT_RS00490	0.74	-1.4
120,384	-		BPHYT_RS00490	0.74	-0.1
120,423	-		BPHYT_RS00490	0.77	-0.6
120,451	-		BPHYT_RS00490	0.79	+0.5
120,527	+		BPHYT_RS00490	0.85	+1.3
120,527	+		BPHYT_RS00490	0.85	+0.2
120,581	+		BPHYT_RS00490	0.89	+1.3
120,582	-		BPHYT_RS00490	0.89	-0.4
120,582	-		BPHYT_RS00490	0.89	-0.7
120,725	-				-1.2
120,725	-				+0.5
120,725	-				+1.1
120,781	-				-0.1
120,809	+				-0.7
120,809	+				-0.2
120,809	+				+3.3
120,810	-				-1.3
120,812	+				+0.1
120,812	+				+0.5
120,813	-				-0.7
120,813	-				-0.4
120,813	-				-0.6
120,987	-		BPHYT_RS00495	0.29	-0.1
121,192	+		BPHYT_RS00495	0.53	-1.6
121,192	+		BPHYT_RS00495	0.53	-1.8
121,220	+		BPHYT_RS00495	0.57	-0.7
121,221	-		BPHYT_RS00495	0.57	+0.0
121,221	-		BPHYT_RS00495	0.57	-1.4
121,226	+		BPHYT_RS00495	0.58	-0.4
121,226	+		BPHYT_RS00495	0.58	-0.4
121,226	+		BPHYT_RS00495	0.58	-1.3
121,226	+		BPHYT_RS00495	0.58	-0.5
121,226	+		BPHYT_RS00495	0.58	-0.5
121,226	+		BPHYT_RS00495	0.58	-0.1
121,227	-		BPHYT_RS00495	0.58	+1.2
121,227	-		BPHYT_RS00495	0.58	-0.9
121,271	+		BPHYT_RS00495	0.63	+0.0
121,298	+		BPHYT_RS00495	0.66	-2.0
121,416	+		BPHYT_RS00495	0.80	-0.3
121,439	+		BPHYT_RS00495	0.83	+0.9
121,529	+				-0.6
121,529	+				-1.9
121,589	+				-0.3