Experiment: 24hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00200 and BPHYT_RS00205 are separated by 185 nucleotides BPHYT_RS00205 and BPHYT_RS00210 overlap by 23 nucleotides
BPHYT_RS00200: BPHYT_RS00200 - amidase, at 53,149 to 54,552
_RS00200
BPHYT_RS00205: BPHYT_RS00205 - DeoR family transcriptional regulator, at 54,738 to 55,496
_RS00205
BPHYT_RS00210: BPHYT_RS00210 - allantoate amidohydrolase, at 55,474 to 56,766
_RS00210
Position (kb) 54
55
56 Strain fitness (log2 ratio) -2
-1
0
1 at 53.792 kb on + strand, within BPHYT_RS00200 at 53.875 kb on + strand, within BPHYT_RS00200 at 53.876 kb on - strand, within BPHYT_RS00200 at 54.094 kb on + strand, within BPHYT_RS00200 at 54.152 kb on + strand, within BPHYT_RS00200 at 54.152 kb on + strand, within BPHYT_RS00200 at 54.248 kb on - strand, within BPHYT_RS00200 at 54.566 kb on - strand at 54.566 kb on - strand at 54.566 kb on - strand at 54.671 kb on + strand at 54.708 kb on - strand at 54.715 kb on + strand at 54.756 kb on - strand at 55.202 kb on + strand, within BPHYT_RS00205 at 55.231 kb on - strand, within BPHYT_RS00205 at 55.450 kb on - strand at 55.460 kb on + strand at 55.483 kb on + strand at 55.483 kb on + strand at 55.484 kb on - strand at 55.484 kb on - strand at 55.484 kb on - strand at 55.494 kb on + strand at 55.634 kb on + strand, within BPHYT_RS00210 at 55.739 kb on - strand, within BPHYT_RS00210 at 55.764 kb on + strand, within BPHYT_RS00210 at 55.765 kb on - strand, within BPHYT_RS00210 at 56.075 kb on - strand, within BPHYT_RS00210 at 56.136 kb on - strand, within BPHYT_RS00210 at 56.136 kb on - strand, within BPHYT_RS00210 at 56.267 kb on - strand, within BPHYT_RS00210 at 56.368 kb on + strand, within BPHYT_RS00210 at 56.369 kb on - strand, within BPHYT_RS00210 at 56.489 kb on + strand, within BPHYT_RS00210
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO2 MOI 1 remove 53,792 + BPHYT_RS00200 0.46 -0.3 53,875 + BPHYT_RS00200 0.52 -1.8 53,876 - BPHYT_RS00200 0.52 -0.1 54,094 + BPHYT_RS00200 0.67 -0.3 54,152 + BPHYT_RS00200 0.71 -0.7 54,152 + BPHYT_RS00200 0.71 +0.3 54,248 - BPHYT_RS00200 0.78 -2.2 54,566 - +1.2 54,566 - -0.6 54,566 - -1.8 54,671 + -0.5 54,708 - -0.2 54,715 + +0.3 54,756 - -0.0 55,202 + BPHYT_RS00205 0.61 -0.7 55,231 - BPHYT_RS00205 0.65 +0.9 55,450 - -1.7 55,460 + +0.1 55,483 + +1.6 55,483 + -0.8 55,484 - +0.6 55,484 - +0.8 55,484 - -2.0 55,494 + +0.2 55,634 + BPHYT_RS00210 0.12 -0.9 55,739 - BPHYT_RS00210 0.20 -0.3 55,764 + BPHYT_RS00210 0.22 +1.3 55,765 - BPHYT_RS00210 0.23 -0.6 56,075 - BPHYT_RS00210 0.46 +0.6 56,136 - BPHYT_RS00210 0.51 -0.5 56,136 - BPHYT_RS00210 0.51 +0.4 56,267 - BPHYT_RS00210 0.61 -1.0 56,368 + BPHYT_RS00210 0.69 -0.0 56,369 - BPHYT_RS00210 0.69 -0.8 56,489 + BPHYT_RS00210 0.78 -0.7
Or see this region's nucleotide sequence