Experiment: 24hr PHYTO MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS25200 and BPHYT_RS25205 are separated by 4 nucleotides BPHYT_RS25205 and BPHYT_RS25210 overlap by 4 nucleotides BPHYT_RS25210 and BPHYT_RS25215 are separated by 73 nucleotides
BPHYT_RS25200: BPHYT_RS25200 - (Fe-S)-binding protein, at 1,226,846 to 1,228,759
_RS25200
BPHYT_RS25205: BPHYT_RS25205 - electron transfer flavoprotein subunit alpha, at 1,228,764 to 1,229,945
_RS25205
BPHYT_RS25210: BPHYT_RS25210 - drug:proton antiporter, at 1,229,942 to 1,230,718
_RS25210
BPHYT_RS25215: BPHYT_RS25215 - (Fe-S)-binding protein, at 1,230,792 to 1,232,105
_RS25215
Position (kb) 1228
1229
1230 Strain fitness (log2 ratio) -1
0
1
2 at 1228.092 kb on - strand, within BPHYT_RS25200 at 1228.317 kb on - strand, within BPHYT_RS25200 at 1228.437 kb on - strand, within BPHYT_RS25200 at 1228.437 kb on - strand, within BPHYT_RS25200 at 1228.463 kb on + strand, within BPHYT_RS25200 at 1228.464 kb on - strand, within BPHYT_RS25200 at 1229.198 kb on + strand, within BPHYT_RS25205 at 1229.198 kb on + strand, within BPHYT_RS25205 at 1229.199 kb on - strand, within BPHYT_RS25205 at 1229.201 kb on - strand, within BPHYT_RS25205 at 1229.316 kb on + strand, within BPHYT_RS25205 at 1229.316 kb on + strand, within BPHYT_RS25205 at 1229.700 kb on + strand, within BPHYT_RS25205 at 1229.700 kb on + strand, within BPHYT_RS25205 at 1230.455 kb on + strand, within BPHYT_RS25210
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO MOI 0.1 remove 1,228,092 - BPHYT_RS25200 0.65 +0.0 1,228,317 - BPHYT_RS25200 0.77 +1.1 1,228,437 - BPHYT_RS25200 0.83 -0.1 1,228,437 - BPHYT_RS25200 0.83 +1.9 1,228,463 + BPHYT_RS25200 0.84 +0.8 1,228,464 - BPHYT_RS25200 0.85 -0.1 1,229,198 + BPHYT_RS25205 0.37 -0.5 1,229,198 + BPHYT_RS25205 0.37 +0.0 1,229,199 - BPHYT_RS25205 0.37 +0.1 1,229,201 - BPHYT_RS25205 0.37 +0.6 1,229,316 + BPHYT_RS25205 0.47 +0.3 1,229,316 + BPHYT_RS25205 0.47 -0.7 1,229,700 + BPHYT_RS25205 0.79 +0.5 1,229,700 + BPHYT_RS25205 0.79 -0.5 1,230,455 + BPHYT_RS25210 0.66 +0.9
Or see this region's nucleotide sequence