Experiment: 24hr PHYTO MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23555 and BPHYT_RS23560 are separated by 424 nucleotides BPHYT_RS23560 and BPHYT_RS23565 are separated by 33 nucleotides BPHYT_RS23565 and BPHYT_RS23570 are separated by 351 nucleotides
BPHYT_RS23555: BPHYT_RS23555 - multidrug transporter, at 855,696 to 856,925
_RS23555
BPHYT_RS23560: BPHYT_RS23560 - hypothetical protein, at 857,350 to 857,571
_RS23560
BPHYT_RS23565: BPHYT_RS23565 - ABC transporter, at 857,605 to 859,398
_RS23565
BPHYT_RS23570: BPHYT_RS23570 - chemotaxis protein CheY, at 859,750 to 860,916
_RS23570
Position (kb) 857
858
859
860 Strain fitness (log2 ratio) -2
-1
0
1 at 856.926 kb on - strand at 857.005 kb on + strand at 857.005 kb on + strand at 857.072 kb on + strand at 857.233 kb on + strand at 857.308 kb on + strand at 857.671 kb on - strand at 857.728 kb on - strand at 858.160 kb on - strand, within BPHYT_RS23565 at 858.201 kb on - strand, within BPHYT_RS23565 at 858.449 kb on + strand, within BPHYT_RS23565 at 858.820 kb on - strand at 859.061 kb on + strand, within BPHYT_RS23565 at 859.638 kb on - strand at 859.639 kb on + strand at 859.890 kb on - strand, within BPHYT_RS23570 at 860.273 kb on - strand, within BPHYT_RS23570 at 860.336 kb on - strand, within BPHYT_RS23570 at 860.336 kb on - strand, within BPHYT_RS23570
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO MOI 0.1 remove 856,926 - -1.3 857,005 + +0.0 857,005 + +0.1 857,072 + -0.5 857,233 + -0.5 857,308 + -1.1 857,671 - -1.9 857,728 - -1.4 858,160 - BPHYT_RS23565 0.31 -0.4 858,201 - BPHYT_RS23565 0.33 +0.8 858,449 + BPHYT_RS23565 0.47 +0.1 858,820 - -0.2 859,061 + BPHYT_RS23565 0.81 +0.1 859,638 - -2.4 859,639 + +0.2 859,890 - BPHYT_RS23570 0.12 -1.7 860,273 - BPHYT_RS23570 0.45 +0.4 860,336 - BPHYT_RS23570 0.50 +0.5 860,336 - BPHYT_RS23570 0.50 +0.2
Or see this region's nucleotide sequence