Experiment: 24hr PHYTO MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS17795 and BPHYT_RS17800 are separated by 302 nucleotides BPHYT_RS17800 and BPHYT_RS17805 are separated by 88 nucleotides BPHYT_RS17805 and BPHYT_RS17810 are separated by 91 nucleotides
BPHYT_RS17795: BPHYT_RS17795 - short-chain dehydrogenase, at 4,016,598 to 4,017,380
_RS17795
BPHYT_RS17800: BPHYT_RS17800 - hypothetical protein, at 4,017,683 to 4,018,144
_RS17800
BPHYT_RS17805: BPHYT_RS17805 - hypothetical protein, at 4,018,233 to 4,018,874
_RS17805
BPHYT_RS17810: BPHYT_RS17810 - transcriptional regulator, at 4,018,966 to 4,019,694
_RS17810
Position (kb) 4017
4018
4019 Strain fitness (log2 ratio) -2
-1
0
1 at 4017.222 kb on - strand, within BPHYT_RS17795 at 4017.332 kb on + strand at 4017.386 kb on - strand at 4017.622 kb on + strand at 4017.637 kb on + strand at 4018.065 kb on + strand, within BPHYT_RS17800 at 4018.066 kb on - strand, within BPHYT_RS17800 at 4018.261 kb on - strand at 4018.576 kb on - strand, within BPHYT_RS17805 at 4018.674 kb on + strand, within BPHYT_RS17805 at 4018.898 kb on + strand at 4018.953 kb on + strand at 4019.006 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO MOI 0.1 remove 4,017,222 - BPHYT_RS17795 0.80 -0.7 4,017,332 + +0.2 4,017,386 - +0.2 4,017,622 + -0.1 4,017,637 + +0.3 4,018,065 + BPHYT_RS17800 0.83 -1.6 4,018,066 - BPHYT_RS17800 0.83 -2.2 4,018,261 - +0.2 4,018,576 - BPHYT_RS17805 0.53 -1.0 4,018,674 + BPHYT_RS17805 0.69 +0.2 4,018,898 + -0.5 4,018,953 + +0.2 4,019,006 + -0.8
Or see this region's nucleotide sequence