Experiment: 24hr PHYTO MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01080 and BPHYT_RS01085 are separated by 689 nucleotides
BPHYT_RS01080: BPHYT_RS01080 - hypothetical protein, at 249,234 to 250,370
_RS01080
BPHYT_RS01085: BPHYT_RS01085 - transposase IS116/IS110/IS902 family protein, at 251,060 to 252,160
_RS01085
Position (kb) 249
250
251 Strain fitness (log2 ratio) -2
-1
0
1 at 248.287 kb on + strand at 248.288 kb on - strand at 248.392 kb on - strand at 248.742 kb on + strand at 248.742 kb on + strand at 248.801 kb on - strand at 249.022 kb on + strand at 249.023 kb on - strand at 249.146 kb on + strand at 249.202 kb on - strand at 249.262 kb on + strand at 249.263 kb on - strand at 249.344 kb on + strand at 249.374 kb on - strand, within BPHYT_RS01080 at 249.403 kb on + strand, within BPHYT_RS01080 at 249.415 kb on + strand, within BPHYT_RS01080 at 249.416 kb on - strand, within BPHYT_RS01080 at 249.588 kb on + strand, within BPHYT_RS01080 at 249.590 kb on + strand, within BPHYT_RS01080 at 249.634 kb on - strand, within BPHYT_RS01080 at 249.656 kb on - strand, within BPHYT_RS01080 at 249.656 kb on - strand, within BPHYT_RS01080 at 249.687 kb on + strand, within BPHYT_RS01080 at 249.688 kb on - strand, within BPHYT_RS01080 at 249.897 kb on + strand, within BPHYT_RS01080 at 249.898 kb on - strand, within BPHYT_RS01080 at 249.954 kb on + strand, within BPHYT_RS01080 at 249.954 kb on + strand, within BPHYT_RS01080 at 249.998 kb on - strand, within BPHYT_RS01080 at 250.048 kb on - strand, within BPHYT_RS01080 at 250.118 kb on + strand, within BPHYT_RS01080 at 250.253 kb on + strand, within BPHYT_RS01080 at 250.253 kb on + strand, within BPHYT_RS01080 at 250.253 kb on + strand, within BPHYT_RS01080 at 250.253 kb on + strand, within BPHYT_RS01080 at 250.274 kb on + strand at 250.274 kb on + strand at 250.274 kb on + strand at 250.334 kb on - strand at 250.334 kb on - strand at 250.336 kb on - strand at 250.643 kb on - strand at 250.684 kb on + strand at 250.731 kb on + strand at 250.751 kb on - strand at 250.898 kb on - strand at 251.049 kb on + strand at 251.105 kb on + strand at 251.105 kb on + strand at 251.105 kb on + strand at 251.106 kb on - strand at 251.215 kb on + strand, within BPHYT_RS01085 at 251.215 kb on + strand, within BPHYT_RS01085 at 251.246 kb on + strand, within BPHYT_RS01085 at 251.247 kb on - strand, within BPHYT_RS01085 at 251.300 kb on + strand, within BPHYT_RS01085 at 251.301 kb on - strand, within BPHYT_RS01085
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO MOI 0.1 remove 248,287 + -0.2 248,288 - +0.0 248,392 - +0.3 248,742 + -0.2 248,742 + -1.0 248,801 - +1.2 249,022 + -0.5 249,023 - +0.6 249,146 + -1.7 249,202 - +0.8 249,262 + -0.5 249,263 - +0.5 249,344 + +0.4 249,374 - BPHYT_RS01080 0.12 -0.1 249,403 + BPHYT_RS01080 0.15 -0.5 249,415 + BPHYT_RS01080 0.16 -0.9 249,416 - BPHYT_RS01080 0.16 +0.6 249,588 + BPHYT_RS01080 0.31 +0.6 249,590 + BPHYT_RS01080 0.31 -0.3 249,634 - BPHYT_RS01080 0.35 -0.7 249,656 - BPHYT_RS01080 0.37 +1.1 249,656 - BPHYT_RS01080 0.37 -0.8 249,687 + BPHYT_RS01080 0.40 -1.1 249,688 - BPHYT_RS01080 0.40 -0.2 249,897 + BPHYT_RS01080 0.58 -0.3 249,898 - BPHYT_RS01080 0.58 -1.5 249,954 + BPHYT_RS01080 0.63 -1.3 249,954 + BPHYT_RS01080 0.63 -0.4 249,998 - BPHYT_RS01080 0.67 +0.1 250,048 - BPHYT_RS01080 0.72 -0.5 250,118 + BPHYT_RS01080 0.78 -0.2 250,253 + BPHYT_RS01080 0.90 -0.6 250,253 + BPHYT_RS01080 0.90 +0.4 250,253 + BPHYT_RS01080 0.90 +0.7 250,253 + BPHYT_RS01080 0.90 -0.4 250,274 + +0.4 250,274 + -1.2 250,274 + +0.2 250,334 - -0.8 250,334 - -0.7 250,336 - -1.7 250,643 - -1.5 250,684 + +0.4 250,731 + -0.1 250,751 - +0.7 250,898 - -2.5 251,049 + +0.8 251,105 + -1.3 251,105 + -0.2 251,105 + -0.5 251,106 - -1.7 251,215 + BPHYT_RS01085 0.14 +0.2 251,215 + BPHYT_RS01085 0.14 +1.1 251,246 + BPHYT_RS01085 0.17 +0.9 251,247 - BPHYT_RS01085 0.17 -0.7 251,300 + BPHYT_RS01085 0.22 +0.8 251,301 - BPHYT_RS01085 0.22 +0.6
Or see this region's nucleotide sequence