Experiment: 24hr PHYTO MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS34925 and BPHYT_RS34930 are separated by 441 nucleotides BPHYT_RS34930 and BPHYT_RS34935 are separated by 1 nucleotides BPHYT_RS34935 and BPHYT_RS34940 are separated by 48 nucleotides
BPHYT_RS34925: BPHYT_RS34925 - porin, at 3,437,175 to 3,438,248
_RS34925
BPHYT_RS34930: BPHYT_RS34930 - Rieske (2Fe-2S) protein, at 3,438,690 to 3,439,004
_RS34930
BPHYT_RS34935: BPHYT_RS34935 - hypothetical protein, at 3,439,006 to 3,439,317
_RS34935
BPHYT_RS34940: BPHYT_RS34940 - 3-phenylpropionate dioxygenase, at 3,439,366 to 3,440,460
_RS34940
Position (kb) 3438
3439
3440 Strain fitness (log2 ratio) -1
0
1 at 3437.842 kb on + strand, within BPHYT_RS34925 at 3437.842 kb on + strand, within BPHYT_RS34925 at 3437.861 kb on - strand, within BPHYT_RS34925 at 3438.007 kb on + strand, within BPHYT_RS34925 at 3438.171 kb on + strand at 3438.171 kb on + strand at 3438.276 kb on + strand at 3438.783 kb on + strand, within BPHYT_RS34930 at 3438.958 kb on - strand, within BPHYT_RS34930 at 3439.380 kb on + strand at 3439.438 kb on + strand at 3439.907 kb on - strand, within BPHYT_RS34940 at 3439.907 kb on - strand, within BPHYT_RS34940
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO MOI 0.1 remove 3,437,842 + BPHYT_RS34925 0.62 +0.3 3,437,842 + BPHYT_RS34925 0.62 -0.0 3,437,861 - BPHYT_RS34925 0.64 +0.9 3,438,007 + BPHYT_RS34925 0.77 -0.0 3,438,171 + +0.8 3,438,171 + +0.2 3,438,276 + -1.1 3,438,783 + BPHYT_RS34930 0.30 -0.3 3,438,958 - BPHYT_RS34930 0.85 -0.9 3,439,380 + -0.2 3,439,438 + -0.1 3,439,907 - BPHYT_RS34940 0.49 -0.4 3,439,907 - BPHYT_RS34940 0.49 -1.2
Or see this region's nucleotide sequence