Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30385

Experiment: 24hr PHYTO MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30375 and BPHYT_RS30380 overlap by 11 nucleotidesBPHYT_RS30380 and BPHYT_RS30385 are separated by 48 nucleotidesBPHYT_RS30385 and BPHYT_RS30390 are separated by 41 nucleotidesBPHYT_RS30390 and BPHYT_RS30395 are separated by 141 nucleotides BPHYT_RS30375: BPHYT_RS30375 - hypothetical protein, at 2,370,616 to 2,372,166 _RS30375 BPHYT_RS30380: BPHYT_RS30380 - glyoxalase, at 2,372,156 to 2,373,106 _RS30380 BPHYT_RS30385: BPHYT_RS30385 - hypothetical protein, at 2,373,155 to 2,373,406 _RS30385 BPHYT_RS30390: BPHYT_RS30390 - phosphohydrolase, at 2,373,448 to 2,374,089 _RS30390 BPHYT_RS30395: BPHYT_RS30395 - small mechanosensitive ion channel protein MscS, at 2,374,231 to 2,375,700 _RS30395 Position (kb) 2373 2374Strain fitness (log2 ratio) -2 -1 0 1at 2372.520 kb on + strand, within BPHYT_RS30380at 2372.520 kb on + strand, within BPHYT_RS30380at 2372.521 kb on - strand, within BPHYT_RS30380at 2372.799 kb on + strand, within BPHYT_RS30380at 2372.799 kb on + strand, within BPHYT_RS30380at 2372.800 kb on - strand, within BPHYT_RS30380at 2372.920 kb on - strand, within BPHYT_RS30380at 2373.113 kb on - strandat 2373.422 kb on - strandat 2373.500 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO MOI 0.1
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2,372,520 + BPHYT_RS30380 0.38 -0.2
2,372,520 + BPHYT_RS30380 0.38 +0.2
2,372,521 - BPHYT_RS30380 0.38 -1.2
2,372,799 + BPHYT_RS30380 0.68 +1.7
2,372,799 + BPHYT_RS30380 0.68 -0.5
2,372,800 - BPHYT_RS30380 0.68 -2.3
2,372,920 - BPHYT_RS30380 0.80 +0.1
2,373,113 - +1.3
2,373,422 - -1.4
2,373,500 + +0.4

Or see this region's nucleotide sequence