Experiment: 24hr PHYTO1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36515 and BPHYT_RS36520 are separated by 183 nucleotides BPHYT_RS36520 and BPHYT_RS36525 are separated by 73 nucleotides BPHYT_RS36525 and BPHYT_RS36530 are separated by 18 nucleotides BPHYT_RS36530 and BPHYT_RS36535 are separated by 85 nucleotides BPHYT_RS36535 and BPHYT_RS36540 are separated by 50 nucleotides
BPHYT_RS36515: BPHYT_RS36515 - hypothetical protein, at 109,961 to 110,335
_RS36515
BPHYT_RS36520: BPHYT_RS36520 - hypothetical protein, at 110,519 to 110,869
_RS36520
BPHYT_RS36525: BPHYT_RS36525 - hypothetical protein, at 110,943 to 111,149
_RS36525
BPHYT_RS36530: BPHYT_RS36530 - hypothetical protein, at 111,168 to 111,620
_RS36530
BPHYT_RS36535: BPHYT_RS36535 - hypothetical protein, at 111,706 to 111,972
_RS36535
BPHYT_RS36540: BPHYT_RS36540 - hypothetical protein, at 112,023 to 112,214
_RS36540
Position (kb) 110
111
112 Strain fitness (log2 ratio) -2
-1
0
1
2 at 110.166 kb on - strand, within BPHYT_RS36515 at 110.189 kb on - strand, within BPHYT_RS36515 at 110.189 kb on - strand, within BPHYT_RS36515 at 110.270 kb on + strand, within BPHYT_RS36515 at 110.270 kb on + strand, within BPHYT_RS36515 at 110.271 kb on - strand, within BPHYT_RS36515 at 110.778 kb on + strand, within BPHYT_RS36520 at 111.048 kb on + strand, within BPHYT_RS36525 at 111.164 kb on + strand at 111.270 kb on - strand, within BPHYT_RS36530 at 111.318 kb on + strand, within BPHYT_RS36530 at 111.318 kb on + strand, within BPHYT_RS36530 at 111.319 kb on - strand, within BPHYT_RS36530 at 111.319 kb on - strand, within BPHYT_RS36530 at 111.319 kb on - strand, within BPHYT_RS36530 at 111.402 kb on - strand, within BPHYT_RS36530 at 111.411 kb on + strand, within BPHYT_RS36530 at 111.536 kb on - strand, within BPHYT_RS36530 at 111.618 kb on + strand at 111.619 kb on - strand at 111.682 kb on - strand at 111.682 kb on - strand at 111.691 kb on + strand at 111.728 kb on + strand at 111.886 kb on + strand, within BPHYT_RS36535 at 111.886 kb on + strand, within BPHYT_RS36535 at 111.887 kb on - strand, within BPHYT_RS36535 at 111.930 kb on + strand, within BPHYT_RS36535 at 111.930 kb on + strand, within BPHYT_RS36535 at 111.930 kb on + strand, within BPHYT_RS36535 at 112.012 kb on - strand at 112.028 kb on + strand at 112.074 kb on + strand, within BPHYT_RS36540
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO1 MOI 1 remove 110,166 - BPHYT_RS36515 0.55 -0.2 110,189 - BPHYT_RS36515 0.61 +0.1 110,189 - BPHYT_RS36515 0.61 +0.6 110,270 + BPHYT_RS36515 0.82 -0.1 110,270 + BPHYT_RS36515 0.82 -0.5 110,271 - BPHYT_RS36515 0.83 +0.7 110,778 + BPHYT_RS36520 0.74 +0.0 111,048 + BPHYT_RS36525 0.51 -1.4 111,164 + +0.4 111,270 - BPHYT_RS36530 0.23 -0.2 111,318 + BPHYT_RS36530 0.33 -2.7 111,318 + BPHYT_RS36530 0.33 -0.7 111,319 - BPHYT_RS36530 0.33 +0.5 111,319 - BPHYT_RS36530 0.33 -0.5 111,319 - BPHYT_RS36530 0.33 +0.8 111,402 - BPHYT_RS36530 0.52 +2.0 111,411 + BPHYT_RS36530 0.54 -1.3 111,536 - BPHYT_RS36530 0.81 -0.4 111,618 + -0.1 111,619 - +0.9 111,682 - +0.5 111,682 - -0.5 111,691 + -0.4 111,728 + +0.5 111,886 + BPHYT_RS36535 0.67 -1.3 111,886 + BPHYT_RS36535 0.67 -0.7 111,887 - BPHYT_RS36535 0.68 -0.1 111,930 + BPHYT_RS36535 0.84 -0.0 111,930 + BPHYT_RS36535 0.84 -1.3 111,930 + BPHYT_RS36535 0.84 -0.4 112,012 - +1.0 112,028 + +0.3 112,074 + BPHYT_RS36540 0.27 +0.7
Or see this region's nucleotide sequence