Experiment: 24hr PHYTO1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS32570 and BPHYT_RS32575 are separated by 314 nucleotides BPHYT_RS32575 and BPHYT_RS32580 are separated by 68 nucleotides BPHYT_RS32580 and BPHYT_RS32585 are separated by 17 nucleotides BPHYT_RS32585 and BPHYT_RS32590 are separated by 800 nucleotides
BPHYT_RS32570: BPHYT_RS32570 - 23S ribosomal RNA, at 2,876,210 to 2,879,112
_RS32570
BPHYT_RS32575: BPHYT_RS32575 - tRNA-Ala, at 2,879,427 to 2,879,502
_RS32575
BPHYT_RS32580: BPHYT_RS32580 - tRNA-Ile, at 2,879,571 to 2,879,647
_RS32580
BPHYT_RS32585: BPHYT_RS32585 - 16S ribosomal RNA, at 2,879,665 to 2,881,259
_RS32585
BPHYT_RS32590: BPHYT_RS32590 - RNA polymerase sigma factor RpoD, at 2,882,060 to 2,884,057
_RS32590
Position (kb)
2879
2880
2881
2882 Strain fitness (log2 ratio)
-1
0
1 at 2881.664 kb on + strand at 2881.665 kb on - strand at 2881.666 kb on + strand at 2881.666 kb on + strand at 2881.667 kb on - strand at 2881.668 kb on + strand at 2881.668 kb on + strand at 2881.668 kb on + strand at 2881.669 kb on - strand at 2881.669 kb on - strand at 2881.669 kb on - strand at 2881.669 kb on - strand at 2881.670 kb on + strand at 2881.670 kb on + strand at 2881.670 kb on + strand at 2881.671 kb on - strand at 2881.671 kb on - strand at 2881.671 kb on - strand at 2881.671 kb on - strand at 2881.671 kb on - strand at 2881.723 kb on + strand at 2881.724 kb on - strand at 2881.724 kb on - strand at 2881.726 kb on - strand at 2881.762 kb on + strand at 2881.763 kb on - strand at 2881.763 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO1 MOI 1 remove 2,881,664 + +0.4 2,881,665 - +0.4 2,881,666 + +0.3 2,881,666 + -0.3 2,881,667 - -0.4 2,881,668 + +0.6 2,881,668 + -1.1 2,881,668 + -0.9 2,881,669 - +0.2 2,881,669 - -1.2 2,881,669 - -0.1 2,881,669 - -0.8 2,881,670 + +1.3 2,881,670 + -0.8 2,881,670 + +0.0 2,881,671 - -0.1 2,881,671 - +0.2 2,881,671 - +0.6 2,881,671 - -0.5 2,881,671 - -0.3 2,881,723 + +0.5 2,881,724 - +0.7 2,881,724 - +1.4 2,881,726 - +0.4 2,881,762 + +0.6 2,881,763 - +0.7 2,881,763 - -0.2
Or see this region's nucleotide sequence