Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26625
Experiment: 24hr PHYTO1 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 24hr PHYTO1 MOI 1 |
---|---|---|---|---|---|
remove | |||||
1,540,538 | + | BPHYT_RS26620 | 0.57 | -0.4 | |
1,540,539 | - | BPHYT_RS26620 | 0.57 | -1.3 | |
1,541,236 | - | -1.4 | |||
1,541,236 | - | -0.2 | |||
1,541,792 | - | BPHYT_RS26625 | 0.49 | -0.0 | |
1,542,252 | - | BPHYT_RS26625 | 0.90 | +0.9 | |
1,542,537 | - | BPHYT_RS26630 | 0.19 | -0.7 | |
1,542,998 | + | BPHYT_RS26630 | 0.70 | +0.6 | |
1,543,270 | - | -1.1 | |||
1,543,344 | + | +0.1 |
Or see this region's nucleotide sequence