Experiment: 24hr PHYTO1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS26190 and BPHYT_RS26195 are separated by 152 nucleotides BPHYT_RS26195 and BPHYT_RS26200 are separated by 3 nucleotides BPHYT_RS26200 and BPHYT_RS26205 are separated by 13 nucleotides
BPHYT_RS26190: BPHYT_RS26190 - lysine transporter LysE, at 1,447,925 to 1,448,557
_RS26190
BPHYT_RS26195: BPHYT_RS26195 - transporter, at 1,448,710 to 1,448,970
_RS26195
BPHYT_RS26200: BPHYT_RS26200 - acetate kinase, at 1,448,974 to 1,450,134
_RS26200
BPHYT_RS26205: BPHYT_RS26205 - phosphoketolase, at 1,450,148 to 1,452,541
_RS26205
Position (kb) 1448
1449
1450
1451 Strain fitness (log2 ratio) -1
0
1
2 at 1448.166 kb on + strand, within BPHYT_RS26190 at 1448.167 kb on - strand, within BPHYT_RS26190 at 1448.301 kb on + strand, within BPHYT_RS26190 at 1448.478 kb on + strand, within BPHYT_RS26190 at 1448.478 kb on + strand, within BPHYT_RS26190 at 1448.600 kb on - strand at 1448.686 kb on - strand at 1449.053 kb on - strand at 1449.381 kb on - strand, within BPHYT_RS26200 at 1449.591 kb on - strand, within BPHYT_RS26200 at 1450.207 kb on - strand at 1450.410 kb on + strand, within BPHYT_RS26205 at 1450.852 kb on + strand, within BPHYT_RS26205 at 1450.853 kb on - strand, within BPHYT_RS26205 at 1450.856 kb on + strand, within BPHYT_RS26205 at 1450.874 kb on - strand, within BPHYT_RS26205
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO1 MOI 1 remove 1,448,166 + BPHYT_RS26190 0.38 +0.0 1,448,167 - BPHYT_RS26190 0.38 +1.1 1,448,301 + BPHYT_RS26190 0.59 +1.0 1,448,478 + BPHYT_RS26190 0.87 +0.4 1,448,478 + BPHYT_RS26190 0.87 -0.6 1,448,600 - -0.3 1,448,686 - +1.3 1,449,053 - +2.3 1,449,381 - BPHYT_RS26200 0.35 -0.1 1,449,591 - BPHYT_RS26200 0.53 -0.8 1,450,207 - +0.6 1,450,410 + BPHYT_RS26205 0.11 -1.5 1,450,852 + BPHYT_RS26205 0.29 +1.3 1,450,853 - BPHYT_RS26205 0.29 +0.2 1,450,856 + BPHYT_RS26205 0.30 +0.1 1,450,874 - BPHYT_RS26205 0.30 +0.0
Or see this region's nucleotide sequence